diff --git a/CNAME b/CNAME new file mode 100644 index 000000000000..28ea114455b3 --- /dev/null +++ b/CNAME @@ -0,0 +1 @@ +cing.net diff --git a/_bibliography/papers.bib b/_bibliography/papers.bib index 7ed262b72c94..6c0cf9f8ece6 100644 --- a/_bibliography/papers.bib +++ b/_bibliography/papers.bib @@ -1,72 +1,289 @@ --- --- -@string{aps = {American Physical Society,}} - -@book{einstein1956investigations, - bibtex_show={true}, - title={Investigations on the Theory of the Brownian Movement}, - author={Einstein, Albert}, - year={1956}, - publisher={Courier Corporation,} -} - -@article{einstein1950meaning, - abbr={AJP}, - bibtex_show={true}, - title={The meaning of relativity}, - author={Einstein, Albert and Taub, AH}, - journal={American Journal of Physics,}, - volume={18}, - number={6}, - pages={403--404}, - year={1950}, - publisher={American Association of Physics Teachers,} -} - -@article{PhysRev.47.777, - abbr={PhysRev}, - title={Can Quantum-Mechanical Description of Physical Reality Be Considered Complete?}, - author={Einstein, A. and Podolsky, B. and Rosen, N.}, - abstract={In a complete theory there is an element corresponding to each element of reality. A sufficient condition for the reality of a physical quantity is the possibility of predicting it with certainty, without disturbing the system. In quantum mechanics in the case of two physical quantities described by non-commuting operators, the knowledge of one precludes the knowledge of the other. Then either (1) the description of reality given by the wave function in quantum mechanics is not complete or (2) these two quantities cannot have simultaneous reality. Consideration of the problem of making predictions concerning a system on the basis of measurements made on another system that had previously interacted with it leads to the result that if (1) is false then (2) is also false. One is thus led to conclude that the description of reality as given by a wave function is not complete.}, - journal={Phys. Rev.,}, - volume={47}, - issue={10}, - pages={777--780}, - numpages={0}, - year={1935}, - month={May}, - publisher=aps, - doi={10.1103/PhysRev.47.777}, - url={http://link.aps.org/doi/10.1103/PhysRev.47.777}, - html={https://journals.aps.org/pr/abstract/10.1103/PhysRev.47.777}, - pdf={example_pdf.pdf}, +@article{mkrtchyan2010adhesion, + title={Adhesion of cylindrical colloids to the surface of a membrane}, + author={Mkrtchyan, Sergey and Ing, Christopher and Chen, Jeff ZY}, + journal={Physical Review E}, + volume={81}, + number={1}, + pages={011904}, + year={2010}, + publisher={APS} +} + +@article{ing2012path, + title={A path-integral Langevin equation treatment of low-temperature doped helium clusters}, + author={Ing, Christopher and Hinsen, Konrad and Yang, Jing and Zeng, Toby and Li, Hui and Roy, Pierre-Nicholas}, + journal={The Journal of Chemical Physics}, + volume={136}, + number={22}, + pages={224309}, + year={2012}, + publisher={American Institute of Physics} +} + +@article{constable2013langevin, + title={Langevin equation path integral ground state}, + author={Constable, Steve and Schmidt, Matthew and Ing, Christopher and Zeng, Tao and Roy, Pierre-Nicholas}, + journal={The Journal of Physical Chemistry A}, + volume={117}, + number={32}, + pages={7461--7467}, + year={2013}, + publisher={American Chemical Society} +} + +@article{chakrabarti2013catalysis, + title={Catalysis of Na+ permeation in the bacterial sodium channel NaVAb}, + author={Chakrabarti, Nilmadhab and Ing, Christopher and Payandeh, Jian and Zheng, Ning and Catterall, William A and Pom{\`e}s, R{\'e}gis}, + journal={Proceedings of the National Academy of Sciences}, + volume={110}, + number={28}, + pages={11331--11336}, + year={2013}, + publisher={National Academy of Sciences} +} + +@article{schmidt2014inclusion, + title={Inclusion of trial functions in the Langevin equation path integral ground state method: Application to parahydrogen clusters and their isotopologues}, + author={Schmidt, Matthew and Constable, Steve and Ing, Christopher and Roy, Pierre-Nicholas}, + journal={The Journal of Chemical Physics}, + volume={140}, + number={23}, + pages={234101}, + year={2014}, + publisher={American Institute of Physics} +} + +@article{little2014modification, + title={Modification and periplasmic translocation of the biofilm exopolysaccharide poly-$\beta$-1, 6-N-acetyl-d-glucosamine}, + author={Little, Dustin J and Li, Grace and Ing, Christopher and DiFrancesco, Benjamin R and Bamford, Natalie C and Robinson, Howard and Nitz, Mark and Pom{\`e}s, R{\'e}gis and Howell, P Lynne}, + journal={Proceedings of the National Academy of Sciences}, + volume={111}, + number={30}, + pages={11013--11018}, + year={2014}, + publisher={National Academy of Sciences} +} + +@article{calmettes2015molecular, + title={The molecular mechanism of Zinc acquisition by the neisserial outer-membrane transporter ZnuD}, + author={Calmettes, Charles and Buckwalter, Carolyn M and El Bakkouri, Majida and Chieh-Lin Lai, Christine and Pogoutse, Anastassia and Gray-Owen, Scott D and Pom{\`e}s, R{\'e}gis and Moraes, Trevor F and others}, + journal={Nature communications}, + volume={6}, + number={1}, + pages={1--11}, + year={2015}, + publisher={Nature Publishing Group} +} + +@article{chan2016mechanism, + title={Mechanism of amyloidogenesis of a bacterial AAA+ chaperone}, + author={Chan, Sze Wah Samuel and Yau, Jason and Ing, Christopher and Liu, Kaiyin and Farber, Patrick and Won, Amy and Bhandari, Vaibhav and Kara-Yacoubian, Nareg and Seraphim, Thiago V and Chakrabarti, Nilmadhab and others}, + journal={Structure}, + volume={24}, + number={7}, + pages={1095--1109}, + year={2016}, + publisher={Cell Press} +} + +@article{ing2016simulation, + title={Simulation studies of ion permeation and selectivity in voltage-gated sodium channels}, + author={Ing, C and Pomes, R}, + journal={Current Topics in Membranes}, + volume={78}, + pages={215--260}, + year={2016}, + publisher={Academic Press} +} + +@article{wang2016structure, + title={Structure and dynamics of extracellular loops in human Aquaporin-1 from solid-state NMR and molecular dynamics}, + author={Wang, Shenlin and Ing, Christopher and Emami, Sanaz and Jiang, Yunjiang and Liang, Hongjun and Pomès, Régis and Brown, Leonid S and Ladizhansky, Vladimir}, + journal={The Journal of Physical Chemistry B}, + volume={120}, + number={37}, + pages={9887--9902}, + year={2016}, + publisher={American Chemical Society} +} + +@article{fleming2016predicting, + title={Predicting protein thermostability upon mutation using molecular dynamics timeseries data}, + author={Fleming, Noah and Kinsella, Benjamin and Ing, Christopher}, + journal={bioRxiv}, + pages={078246}, + year={2016}, + publisher={Cold Spring Harbor Laboratory} +} + +@article{kim2017role, + title={The role of dimer asymmetry and protomer dynamics in enzyme catalysis}, + author={Kim, Tae Hun and Mehrabi, Pedram and Ren, Zhong and Sljoka, Adnan and Ing, Christopher and Bezginov, Alexandr and Ye, Libin and Pom{\`e}s, R{\'e}gis and Prosser, R Scott and Pai, Emil F}, + journal={Science}, + volume={355}, + number={6322}, + pages={eaag2355}, + year={2017}, + publisher={American Association for the Advancement of Science}, + selected={true} +} + +@article{yamashita2017stim1, + title={STIM1 activates CRAC channels through rotation of the pore helix to open a hydrophobic gate}, + author={Yamashita, Megumi and Yeung, Priscilla S-W and Christopher, E and McNally, Beth A and Pom{\`e}s, R{\'e}gis and Prakriya, Murali}, + journal={Nature communications}, + volume={8}, + number={1}, + pages={1--13}, + year={2017}, + publisher={Nature Publishing Group} +} + +@article{lenaeus2017structures, + title={Structures of closed and open states of a voltage-gated sodium channel}, + author={Lenaeus, Michael J and Gamal El-Din, Tamer M and Ing, Christopher and Ramanadane, Karthik and Pom{\`e}s, R{\'e}gis and Zheng, Ning and Catterall, William A}, + journal={Proceedings of the National Academy of Sciences}, + volume={114}, + number={15}, + pages={E3051--E3060}, + year={2017}, + publisher={National Academy of Sciences} +} + +@phdthesis{ing2011path, + title={Path integral Langevin dynamics of complex molecular systems: from low-temperature quantum clusters to biomolecules}, + author={Ing, Christopher E}, + year={2011}, + school={University of Waterloo} +} + +@article{yeung2018mapping, + title={Mapping the functional anatomy of Orai1 transmembrane domains for CRAC channel gating}, + author={Yeung, Priscilla S-W and Yamashita, Megumi and Ing, Christopher E and Pom{\`e}s, R{\'e}gis and Freymann, Douglas M and Prakriya, Murali}, + journal={Proceedings of the National Academy of Sciences}, + volume={115}, + number={22}, + pages={E5193--E5202}, + year={2018}, + publisher={National Academy of Sciences} +} + +@article{jiang2018structural, + title={Structural basis for gating pore current in periodic paralysis}, + author={Jiang, Daohua and Gamal El-Din, Tamer M and Lu, Peilong and Pom{\`e}s, R{\'e}gis and Zheng, Ning and Catterall, William A and others}, + journal={Nature}, + volume={557}, + number={7706}, + pages={590--594}, + year={2018}, + publisher={Nature Publishing Group}, selected={true} } -@article{einstein1905molekularkinetischen, - title={{\"U}ber die von der molekularkinetischen Theorie der W{\"a}rme geforderte Bewegung von in ruhenden Fl{\"u}ssigkeiten suspendierten Teilchen}, - author={Einstein, A.}, - journal={Annalen der physik,}, - volume={322}, - number={8}, - pages={549--560}, - year={1905}, - publisher={Wiley Online Library} +@article{chin2018lipid, + title={Lipid interactions enhance activation and potentiation of cystic fibrosis transmembrane conductance regulator (CFTR)}, + author={Chin, Stephanie and Ramjeesingh, Mohabir and Hung, Maurita and Ere{\~n}o-Oreba, June and Ing, Chris and Zeng, Zhi W and Cui, Hong and Pom{\`e}s, R{\'e}gis and Julien, Jean-Philippe and Bear, Christine E}, + journal={BioRxiv}, + pages={495010}, + year={2018}, + publisher={Cold Spring Harbor Laboratory} +} + +@article{mehrabi2019substrate, + title={Substrate-based allosteric regulation of a homodimeric enzyme}, + author={Mehrabi, Pedram and Di Pietrantonio, Christopher and Kim, Tae Hun and Sljoka, Adnan and Taverner, Keith and Ing, Christopher and Kruglyak, Natasha and Pomes, Regis and Pai, Emil F and Prosser, R Scott}, + journal={Journal of the American Chemical Society}, + volume={141}, + number={29}, + pages={11540--11556}, + year={2019}, + publisher={American Chemical Society} +} + +@article{heybrock2019lysosomal, + title={Lysosomal integral membrane protein-2 (LIMP-2/SCARB2) is involved in lysosomal cholesterol export}, + author={Heybrock, Saskia and Kanerva, Kristiina and Meng, Ying and Liang, Anna and Xiong, Zi-Jian and Weng, Xialian and Ah Kim, Young and Collins, Richard and Trimble, William and Pom{\`e}s, R{\'e}gis and others}, + journal={Nature communications}, + volume={10}, + number={1}, + pages={1--12}, + year={2019}, + publisher={Nature Publishing Group} +} + +@article{yamashita2020basic, + title={The basic residues in the Orai1 channel inner pore promote opening of the outer hydrophobic gate}, + author={Yamashita, Megumi and Christopher, E and Yeung, Priscilla See-Wai and Maneshi, Mohammad M and Pom{\`e}s, R{\'e}gis and Prakriya, Murali}, + journal={Journal of General Physiology}, + volume={152}, + number={1}, + year={2020}, + publisher={The Rockefeller University Press} +} + +@article{banchi2020molecular, + title={Molecular docking with Gaussian boson sampling}, + author={Banchi, Leonardo and Fingerhuth, Mark and Babej, Tomas and Ing, Christopher and Arrazola, Juan Miguel}, + journal={Science advances}, + volume={6}, + number={23}, + pages={eaax1950}, + year={2020}, + publisher={American Association for the Advancement of Science}, + selected={true} +} + +@article{babej2018quantum, + title={A quantum alternating operator ansatz with hard and soft constraints for lattice protein folding}, + author={Babej, Tomas and Fingerhuth, Mark and Ing, Christopher}, + journal={arXiv preprint arXiv:1810.13411}, + year={2018} +} + +@phdthesis{ing2019ion, + title={Ion Permeation and Selectivity in Voltage-gated Sodium Channels}, + author={Ing, Christopher}, + year={2019}, + school={University of Toronto (Canada)} +} + +@article{yeung2020sulfur, + title={A sulfur-aromatic gate latch is essential for opening of the Orai1 channel pore}, + author={Yeung, Priscilla SW and Ing, Christopher E and Yamashita, Megumi and Pom{\`e}s, R{\'e}gis and Prakriya, Murali}, + journal={Elife}, + volume={9}, + year={2020}, + publisher={eLife Sciences Publications, Ltd} +} + +@article{reichheld2021evolutionary, + title={The evolutionary background and functional consequences of the rs2071307 polymorphism in human tropoelastin}, + author={Reichheld, Sean E and Muiznieks, Lisa D and Huynh, Quang and Wang, Nick and Ing, Christopher and Miao, Ming and Sitarz, Eva E and Pom{\`e}s, R{\'e}gis and Sharpe, Simon and Keeley, Fred W}, + journal={Biopolymers}, + volume={112}, + number={2}, + pages={e23414}, + year={2021}, + publisher={John Wiley \& Sons, Inc. Hoboken, USA} } -@article{einstein1905movement, - abbr={Ann. Phys.}, - title={Un the movement of small particles suspended in statiunary liquids required by the molecular-kinetic theory 0f heat}, - author={Einstein, A.}, - journal={Ann. Phys.,}, - volume={17}, - pages={549--560}, - year={1905} +@article{babej2018coarse, + title={Coarse-grained lattice protein folding on a quantum annealer}, + author={Babej, Tom{\'a}{\v{s}} and Ing, Christopher and Fingerhuth, Mark}, + journal={arXiv preprint arXiv:1811.00713}, + year={2018} } -@article{einstein1905electrodynamics, - title={On the electrodynamics of moving bodies}, - author={Einstein, A.}, - year={1905} +@article{ing2014catalysis, + title={Catalysis and Selectivity of Na+ Permeation in Bacterial Sodium Channel NaVAb}, + author={Ing, Christopher and Chakrabarti, Nilmadhab and Payandeh, Jian and Zheng, Ning and Catterall, William A and Pom{\`e}s, R{\'e}gis}, + journal={Biophysical Journal}, + volume={106}, + number={2}, + pages={131a}, + year={2014}, + publisher={Elsevier} } diff --git a/_config.yml b/_config.yml index 8f69a13c388d..421862606389 100644 --- a/_config.yml +++ b/_config.yml @@ -3,23 +3,23 @@ # ----------------------------------------------------------------------------- title: blank # the website title (if blank, full name will be used instead) -first_name: You -middle_name: R. -last_name: Name -email: you@example.com +first_name: Christopher +middle_name: +last_name: Ing +email: ing.chris@gmail.com description: > # the ">" symbol means to ignore newlines until "footer_text:" A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design. footer_text: > Powered by Jekyll with al-folio theme. Hosted by GitHub Pages. Photos from Unsplash. -keywords: jekyll, jekyll-theme, academic-website, portfolio-website # add your own keywords or leave empty +keywords: christopher-ing, jekyll, jekyll-theme, academic-website, portfolio-website # add your own keywords or leave empty lang: en # the language of your site (for example: en, fr, cn, ru, etc.) -icon: ⚛️ # the emoji used as the favicon (alternatively, provide image name in /assets/img/) +icon: 🔬 # the emoji used as the favicon (alternatively, provide image name in /assets/img/) -url: https://alshedivat.github.io # the base hostname & protocol for your site -baseurl: /al-folio # the subpath of your site, e.g. /blog/ +url: https://cing.github.io # the base hostname & protocol for your site +baseurl: # the subpath of your site, e.g. /blog/ last_updated: false # set to true if you want to display last updated in the footer impressum_path: # set to path to include impressum link in the footer, use the same path as permalink in a page, helps to conform with EU GDPR @@ -29,7 +29,7 @@ impressum_path: # set to path to include impressum link in the footer, use the # will use title and url fields # Take a look to https://github.com/jekyll/jekyll-feed for more customization -rss_icon: true +rss_icon: false # ----------------------------------------------------------------------------- # Layout @@ -55,25 +55,25 @@ og_image: # The site-wide (default for all links) Open Graph preview image # Social integration # ----------------------------------------------------------------------------- -github_username: # your GitHub user name -gitlab_username: # your GitLab user name -twitter_username: # your Twitter handle -linkedin_username: # your LinkedIn user name -scholar_userid: # your Google Scholar ID +github_username: cing # your GitHub user name +gitlab_username: cing # your GitLab user name +twitter_username: jsci # your Twitter handle +linkedin_username: christopher-ing # your LinkedIn user name +scholar_userid: 3B0r6EsAAAAJ # your Google Scholar ID orcid_id: # your ORCID ID medium_username: # your Medium username quora_username: # your Quora username publons_id: # your ID on Publons research_gate_profile: # your profile on ResearchGate blogger_url: # your blogger URL -work_url: # work page URL +work_url: https://www.proteinqure.com/ # work page URL keybase_username: # your keybase user name wikidata_id: # your wikidata id dblp_url: # your DBLP profile url stackoverflow_id: #your stackoverflow id contact_note: > - You can even add a little note about which of these is the best way to reach you. + Personal inquiries preferred by email, and professional contacts through LinkedIn. # ----------------------------------------------------------------------------- # Analytics and search engine verification @@ -90,16 +90,16 @@ bing_site_verification: # out your bing-site-verification ID (Bing Webmaster) # ----------------------------------------------------------------------------- blog_name: al-folio # blog_name will be displayed in your blog page -blog_nav_title: blog # your blog must have a title for it to be displayed in the nav bar +blog_nav_title: # your blog must have a title for it to be displayed in the nav bar blog_description: a simple whitespace theme for academics permalink: /blog/:year/:title/ # Pagination pagination: - enabled: true + enabled: false # Comments -disqus_shortname: al-folio # put your disqus shortname +disqus_shortname: # put your disqus shortname # https://help.disqus.com/en/articles/1717111-what-s-a-shortname # External sources. @@ -209,8 +209,8 @@ jekyll-archives: scholar: - last_name: Einstein - first_name: [Albert, A.] + last_name: Ing + first_name: [Christopher, C.] style: apa locale: en @@ -277,7 +277,7 @@ enable_masonry: true # enables automatic project cards arangement enable_math: true # enables math typesetting (uses MathJax) enable_tooltips: false # enables automatic tooltip links generated # for each section titles on pages and posts -enable_darkmode: true # enables switching between light/dark modes +enable_darkmode: false # enables switching between light/dark modes enable_navbar_social: false # enables displaying social links in the # navbar on the about page enable_project_categories: true # enables categorization of projects into diff --git a/_data/cv.yml b/_data/cv.yml index 5b1157240e07..c3a2387687e1 100644 --- a/_data/cv.yml +++ b/_data/cv.yml @@ -2,64 +2,69 @@ type: map contents: - name: Full Name - value: Albert Einstein + value: Christopher Ing - name: Date of Birth - value: 14th March 1879 + value: 15th February 1986 - name: Languages - value: English, German + value: English - title: Education type: time_table contents: - - title: PhD - institution: University of Zurich, Zurich, Switzerland - year: 1905 + - title: PhD Biochemistry + institution: University of Toronto, Toronto, Canada + year: 2018 description: - - Description 1. - - Description 2. - - title: Description 3. + - title: Ion Permeation and Selectivity in Voltage-gated Sodium Channels contents: - - Sub-description 1. - - Sub-description 2. - - title: Federal teaching diploma - institution: Eidgenössische Technische Hochschule, Zurich, Switzerland - year: 1900 + - Studied the molecular structure and function of proteins, specifically voltage-gated sodium channels and other ion channels. + - Performed all-atom simulations using massive high-performance computing resources and analyzed data using novel methodological approaches. + - Engaged in multiple national and international collaborations with experimental scientists (electrophysiology, solution and solid-state NMR, x-ray crystallography, cryo-EM), some of which were self-initiated. + - Supervised multiple undergraduate and graduate level research projects. Presented at the Biophysical Society Conference four consecutive years. + - title: MSc, Physics + institution: University of Waterloo, Waterloo, Canada + year: 2011 description: - - Description 1. - - Description 2. - + - title: "Path-Integral Langevin Dynamics of Complex Molecular Systems: From Low-temperature Quantum Clusters to Biomolecules" + contents: + - Studied ultra-low temperature helium clusters using quantum molecular dynamics methods + - Implemented normal mode path integral molecular dynamics in MMTK, an open-source molecular dynamics software package as part of an international collaboration supported by a Consulat Général de France scholarship (Synchrotron SOLEIL). + - title: BSc, Computational Physics + institution: University of Waterloo, Waterloo, Canada + year: 2009 - title: Experience type: time_table contents: - - title: Professor of Theoretical Physics - institution: Institute for Advanced Study, Princeton University - year: 1933 - 1955 + - title: Chief Science Officer, Co-founder + institution: ProteinQure, Toronto + year: 2017 - Present description: - - Description 1. - - Description 2. - - title: Description 3. - contents: - - Sub-description 1. - - Sub-description 2. - - title: Visiting Professor - institution: California Institute of Technology, Pasadena, California, US - year: 1933 + - Development and application of novel workflows for protein therapeutic design for internal and external programs + - title: Summer of Code Developer + institution: KDE + year: 2009 description: - - Description 1. - - Description 2. + - Implemented a real-time smoothed particle hydrodynamics algorithm in a physics education software package using C++/Qt. - - title: Director - institution: Kaiser Wilhelm Institute for Physics, Berlin, Germany. - year: 1917-1933 + - title: Computational Chemist + institution: University of Notre Dame, Indiana, United States of America + year: 2008 + description: + - Used a Fortran/Gaussian workflow for performing electronic structure research of hydroxyl water clusters and presented research at the Canadian Undergraduate Physics Conference 2008. - - title: Professor of Theoretical Physics - institution: Karl-Ferdinand University, Prague, Czechoslovakia - year: 1911 - 1917 + - title: Medical Imaging Software Developer + institution: Sunnybrook Health Sciences Centre, Toronto, Canada + year: 2007 description: + - Worked in the Cardiac Imaging Group contributing to a C++ project for real-time MR imaging by adding multi-slice multi-FOV catheter tracking. + - Developed on Linux platform with open-source tools such as Eclipse, Bugzilla, CVS, and GDB. - - title: Associate Professor of Theoretical Physics - institution: University of Zurich, Zurich, Switzerland - year: 1909 - 1911 + - title: Bioinformatics Researcher + institution: University Health Network, Toronto, Canada + year: 2006 - 2007 + description: + - Worked in the Microarray Centre Bioinformatics Group developing a statistical research tool in C# for visualizing gene ontology in expression data sets. + - Wrote Perl scripts for sequence alignment, annotation of genes, and MySQL database integration. - title: Open Source Projects type: time_table @@ -68,30 +73,43 @@ year: 2015-now description: A beautiful, simple, clean, and responsive Jekyll theme for academics. -- title: Honors and Awards - type: time_table - contents: - - year: 1921 - items: - - Nobel Prize in Physics - - Matteucci Medal - - year: 2029 - items: - - Max Planck Medal - - title: Academic Interests type: nested_list contents: - - title: Topic 1. + - title: Protein Structure and Function items: - - Description 1. - - Description 2. - - title: Topic 2. + - Membrane protein structure, dynamics, and function + - Enzyme dynamics and mechanism of catalysis + - Protein hydration, flexibility, and loop dynamics + - Protein and peptide folding + - Thermodynamics and structure of protein-protein and protein-ligand binding + - Non-canonical amino acid containing peptides + - Molecular simulation of proteins (and enhanced sampling) + - Protein design, grafting, docking, homology modelling, and de novo design + - title: Drug Discovery + items: + - Hit identification and design for binder design + - Structure-based drug design for lead optimization + - QSAR and activity prediction and interpretation + - title: Ion channels + items: + - Ion permeation mechanism and selective chemical interactions + - Channelopathies and other genetic perturbations on channel function + - Molecular mechanism of channel gating, channel blockers, and pharmacology + - title: Scientific Computing + items: + - Python scripting and software development + - Novel data visualization and plotting for interpretation of biophysical processes + - Massively parallel repeated simulations and data analysis workflows + - Scientific software and workflow development for reproducible research + - title: Machine Learning items: - - Description 1. - - Description 2. + - Molecular machine learning of chemical structure + - Protein structure and dynamics featurization + - Language models for protein sequence design + - Structure and property prediction models for protein binder design - title: Other Interests type: list contents: - - Hobbies: Hobby 1, Hobby 2, etc. + - Hobbies: Cycling, DJing and Turntablism, Film and Television, Cooking and Fine Dining, Mixology and Beer, Science Education. diff --git a/_pages/about.md b/_pages/about.md index 7fdb4d98c5e3..bb647cf9b48a 100644 --- a/_pages/about.md +++ b/_pages/about.md @@ -2,24 +2,22 @@ layout: about title: about permalink: / -subtitle: Affiliations. Address. Contacts. Moto. Etc. +subtitle: Computational Biophysicist, and Co-Founder at ProteinQure Inc. profile: align: right image: prof_pic.jpg - image_cicular: false # crops the image to make it circular + image_cicular: true # crops the image to make it circular address: > -

555 your office number

-

123 your address street

-

Your City, State 12345

+

119 Spadina Ave.

+

Suite 304

+

Toronto, Canada M5V2L1

-news: true # includes a list of news items +news: false # includes a list of news items selected_papers: true # includes a list of papers marked as "selected={true}" social: true # includes social icons at the bottom of the page --- -Write your biography here. Tell the world about yourself. Link to your favorite [subreddit](http://reddit.com). You can put a picture in, too. The code is already in, just name your picture `prof_pic.jpg` and put it in the `img/` folder. +I'm passionate about building at the intersection of life science, physical science, computer science, and data science. To overcome challenging problems in this space requires innovation and collaboration, and to better enable that, I strive to create tools to enable abstraction, accelerate experimentation, and tighten communication. However, I excel most in directing and performing translational applications of new technologies to fields like drug discovery. -Put your address / P.O. box / other info right below your picture. You can also disable any these elements by editing `profile` property of the YAML header of your `_pages/about.md`. Edit `_bibliography/papers.bib` and Jekyll will render your [publications page](/al-folio/publications/) automatically. - -Link to your social media connections, too. This theme is set up to use [Font Awesome icons](http://fortawesome.github.io/Font-Awesome/) and [Academicons](https://jpswalsh.github.io/academicons/), like the ones below. Add your Facebook, Twitter, LinkedIn, Google Scholar, or just disable all of them. +Outside of my professional interests, I'm most fascinating by remixing, algorthmic, generative art. I'm a semi-retired turntablist and DJ, but continue to follow electronic music and hip-hop culture as it intersects with new technologies. I enjoy unconventional, indie, and open-world video games. I'm an avid cyclist and occasional disc golfer. diff --git a/_pages/cv.md b/_pages/cv.md index d879c1f65c61..8a76c0f2a692 100644 --- a/_pages/cv.md +++ b/_pages/cv.md @@ -4,5 +4,5 @@ permalink: /cv/ title: cv nav: true nav_order: 3 -cv_pdf: example_pdf.pdf +cv_pdf: christopher_ing_cv_2021.pdf --- diff --git a/_pages/dropdown.md b/_pages/dropdown.md deleted file mode 100644 index 4a8a8052ac4c..000000000000 --- a/_pages/dropdown.md +++ /dev/null @@ -1,13 +0,0 @@ ---- -layout: page -title: submenus -nav: true -nav_order: 5 -dropdown: true -children: - - title: publications - permalink: /publications/ - - title: divider - - title: projects - permalink: /projects/ ---- \ No newline at end of file diff --git a/_pages/publications.md b/_pages/publications.md index fa76cd4975e6..edd1b3cbc152 100644 --- a/_pages/publications.md +++ b/_pages/publications.md @@ -2,8 +2,8 @@ layout: page permalink: /publications/ title: publications -description: publications by categories in reversed chronological order. generated by jekyll-scholar. -years: [1956, 1950, 1935, 1905] +description: diverse publications on the topic of protein structure, protein dynamics, computational biophysics, and molecular modelling. +years: [2021, 2020, 2019, 2018, 2017, 2016, 2015, 2014, 2013, 2012] nav: true nav_order: 1 --- diff --git a/_pages/teaching.md b/_pages/teaching.md deleted file mode 100644 index 1a6c5be844c7..000000000000 --- a/_pages/teaching.md +++ /dev/null @@ -1,12 +0,0 @@ ---- -layout: page -permalink: /teaching/ -title: teaching -description: Materials for courses you taught. Replace this text with your description. -nav: true -nav_order: 4 ---- - -For now, this page is assumed to be a static description of your courses. You can convert it to a collection similar to `_projects/` so that you can have a dedicated page for each course. - -Organize your courses by years, topics, or universities, however you like! diff --git a/_sass/_themes.scss b/_sass/_themes.scss index 118bca7a873a..b754ac7fd6cb 100644 --- a/_sass/_themes.scss +++ b/_sass/_themes.scss @@ -7,8 +7,8 @@ --global-code-bg-color: #{$code-bg-color-light}; --global-text-color: #{$black-color}; --global-text-color-light: #{$grey-color}; - --global-theme-color: #{$purple-color}; - --global-hover-color: #{$purple-color}; + --global-theme-color: #{$green-color}; + --global-hover-color: #{$green-color}; --global-footer-bg-color: #{$grey-color-dark}; --global-footer-text-color: #{$grey-color-light}; --global-footer-link-color: #{$white-color}; diff --git a/assets/img/prof_pic.jpg b/assets/img/prof_pic.jpg index 46bcf9c91ade..0d1240477e98 100644 Binary files a/assets/img/prof_pic.jpg and b/assets/img/prof_pic.jpg differ diff --git a/assets/pdf/christopher_ing_cv_2021.pdf b/assets/pdf/christopher_ing_cv_2021.pdf new file mode 100644 index 000000000000..2ecfc3fec1d2 Binary files /dev/null and b/assets/pdf/christopher_ing_cv_2021.pdf differ diff --git a/assets/pdf/example_pdf.pdf b/assets/pdf/example_pdf.pdf deleted file mode 100644 index b1f80dbf28c0..000000000000 Binary files a/assets/pdf/example_pdf.pdf and /dev/null differ