BSSE COVID-19 sequencing of test swab samples

Wastewater-derived Respiratory Syncytial Virus data analysis

Rapid Viral Variant Exploration and Detection - Interactive WebApp

WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

Procedure used for the surveillance of SARS-CoV-2, RSV and Influenza genomic variants in wastewater.

Inference and analysis of mutation trees in Python

Deconvolution for Wastewater Genomics

Wrangling short-read sequencing data for import into SILO

Nested Effects Models based Perturbation Inference - https://doi.org/10.1093/bioinformatics/btab113 - https://bioconductor.org/packages/nempi