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new oxy example plot
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cmocean/_sources/index.txt

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@@ -133,12 +133,12 @@ The *gray* colormap is sequential from black to white, with uniform steps throug
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oxy
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The *oxy* colormap is sequential for most of the colormap, representing the normal range of oxygen saturation in ocean water, and diverging 80% of the way into the colormap to represent a state of supersaturation. The bottom 20% of the colormap is colored reddish to highlight hypoxic or low oxygen water, but to still print relatively seamlessly into grayscale in case the red hue is not important for an application. The top 20% of the colormap, after the divergence, is colored yellow to highlight the supersaturated water. The minimum and maximum values of this colormap are meant to be controlled in order to properly place the low oxygen and supersaturated oxygen states properly. This colormap was developed for the Mississippi river plume area where both low and supersaturated conditions are regularly seen and monitored. Examples of this colormap (without colorbar limits being controlled to set the values of the red and yellow regions) are shown from Texas A&M University gliders.
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The *oxy* colormap is sequential for most of the colormap, representing the normal range of oxygen saturation in ocean water, and diverging 80% of the way into the colormap to represent a state of supersaturation. The bottom 20% of the colormap is colored reddish to highlight hypoxic or low oxygen water, but to still print relatively seamlessly into grayscale in case the red hue is not important for an application. The top 20% of the colormap, after the divergence, is colored yellow to highlight the supersaturated water. The minimum and maximum values of this colormap are meant to be controlled in order to properly place the low oxygen and supersaturated oxygen states properly. This colormap was developed for the Mississippi river plume area where both low and supersaturated conditions are regularly seen and monitored.
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.. image:: http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_540/plots/sci_oxy4_oxygen.png
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:target: http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_540/plots/sci_oxy4_oxygen.png
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.. image:: http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_541/plots/sci_oxy4_oxygen.png
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:target: http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_541/plots/sci_oxy4_oxygen.png
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.. figure:: https://cloud.githubusercontent.com/assets/3487237/16996267/85ac01ea-4e7e-11e6-9801-ee97f7e65940.png
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:target: https://cloud.githubusercontent.com/assets/3487237/16996267/85ac01ea-4e7e-11e6-9801-ee97f7e65940.png
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Model output in the northwest Gulf of Mexico from the Physical Oceanography Numerical Group (PONG) at Texas A&M. A simulation of bottom oxygen using a simple parameterization of bottom oxygen utilization reveals the complex structure of bottom oxygen. While the area affected by hypoxia stretches nearly 400 km along the shelf, variability on much smaller scales, down to a few kilometers, is also evident. The position of the Mississippi/Atchafalaya river plume, and instabilities present within the plume, determine the extent and structure of the hypoxic bottom waters. By `Veronica Ruiz <http://pong.tamu.edu/people.html#veronica>`_ at Texas A&M.
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deep
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cmocean/index.html

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@@ -141,14 +141,16 @@ <h3>gray<a class="headerlink" href="#gray" title="Permalink to this headline">¶
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</div>
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<div class="section" id="oxy">
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<h3>oxy<a class="headerlink" href="#oxy" title="Permalink to this headline"></a></h3>
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<p>The <em>oxy</em> colormap is sequential for most of the colormap, representing the normal range of oxygen saturation in ocean water, and diverging 80% of the way into the colormap to represent a state of supersaturation. The bottom 20% of the colormap is colored reddish to highlight hypoxic or low oxygen water, but to still print relatively seamlessly into grayscale in case the red hue is not important for an application. The top 20% of the colormap, after the divergence, is colored yellow to highlight the supersaturated water. The minimum and maximum values of this colormap are meant to be controlled in order to properly place the low oxygen and supersaturated oxygen states properly. This colormap was developed for the Mississippi river plume area where both low and supersaturated conditions are regularly seen and monitored. Examples of this colormap (without colorbar limits being controlled to set the values of the red and yellow regions) are shown from Texas A&amp;M University gliders.</p>
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<a class="reference external image-reference" href="http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_540/plots/sci_oxy4_oxygen.png"><img alt="http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_540/plots/sci_oxy4_oxygen.png" src="http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_540/plots/sci_oxy4_oxygen.png" /></a>
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<a class="reference external image-reference" href="http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_541/plots/sci_oxy4_oxygen.png"><img alt="http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_541/plots/sci_oxy4_oxygen.png" src="http://gcoos2.tamu.edu/gandalf_data/deployments/tamu/unit_541/plots/sci_oxy4_oxygen.png" /></a>
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<p>The <em>oxy</em> colormap is sequential for most of the colormap, representing the normal range of oxygen saturation in ocean water, and diverging 80% of the way into the colormap to represent a state of supersaturation. The bottom 20% of the colormap is colored reddish to highlight hypoxic or low oxygen water, but to still print relatively seamlessly into grayscale in case the red hue is not important for an application. The top 20% of the colormap, after the divergence, is colored yellow to highlight the supersaturated water. The minimum and maximum values of this colormap are meant to be controlled in order to properly place the low oxygen and supersaturated oxygen states properly. This colormap was developed for the Mississippi river plume area where both low and supersaturated conditions are regularly seen and monitored.</p>
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<div class="figure" id="id15">
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<a class="reference external image-reference" href="https://cloud.githubusercontent.com/assets/3487237/16996267/85ac01ea-4e7e-11e6-9801-ee97f7e65940.png"><img alt="https://cloud.githubusercontent.com/assets/3487237/16996267/85ac01ea-4e7e-11e6-9801-ee97f7e65940.png" src="https://cloud.githubusercontent.com/assets/3487237/16996267/85ac01ea-4e7e-11e6-9801-ee97f7e65940.png" /></a>
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<p class="caption"><span class="caption-text">Model output in the northwest Gulf of Mexico from the Physical Oceanography Numerical Group (PONG) at Texas A&amp;M. A simulation of bottom oxygen using a simple parameterization of bottom oxygen utilization reveals the complex structure of bottom oxygen. While the area affected by hypoxia stretches nearly 400 km along the shelf, variability on much smaller scales, down to a few kilometers, is also evident. The position of the Mississippi/Atchafalaya river plume, and instabilities present within the plume, determine the extent and structure of the hypoxic bottom waters. By <a class="reference external" href="http://pong.tamu.edu/people.html#veronica">Veronica Ruiz</a> at Texas A&amp;M.</span></p>
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</div>
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<div class="section" id="deep">
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<h3>deep<a class="headerlink" href="#deep" title="Permalink to this headline"></a></h3>
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<p>The <em>deep</em> colormap is sequential from light yellow to potentially represent shallower water through pale green to increasingly dark blue and purple to represent increasing depth.</p>
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<div class="figure" id="id15">
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<div class="figure" id="id16">
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<a class="reference external image-reference" href="http://iuryt.github.io/tutorial/Como_fazer_um_mapa02.html"><img alt="https://cloud.githubusercontent.com/assets/3487237/16900541/4af66c4c-4bf5-11e6-92a9-82eaa39cb18b.png" src="https://cloud.githubusercontent.com/assets/3487237/16900541/4af66c4c-4bf5-11e6-92a9-82eaa39cb18b.png" /></a>
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<p class="caption"><span class="caption-text">Bathymetry plot, by <a class="reference external" href="http://iuryt.github.io/">Iury Sousa</a></span></p>
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<div class="section" id="amp">
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<h3>amp<a class="headerlink" href="#amp" title="Permalink to this headline"></a></h3>
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<p>The <em>amp</em> colormap is sequential from whitish to dark red and could be used to represent an increase in wave height values. This colormap is the positive half of the <em>balance</em> colormap.</p>
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<div class="figure" id="id16">
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<div class="figure" id="id17">
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<a class="reference external image-reference" href="http://soliton.vm.bytemark.co.uk/pub/cpt-city/"><img alt="https://cloud.githubusercontent.com/assets/3487237/16920916/840d91d4-4cdd-11e6-8db5-f93cd61b78c2.png" src="https://cloud.githubusercontent.com/assets/3487237/16920916/840d91d4-4cdd-11e6-8db5-f93cd61b78c2.png" /></a>
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<p class="caption"><span class="caption-text">Earthquake magnitude, by <a class="reference external" href="http://www.natalieaccardo.com/">Natalie Accardo</a> using GMT.</span></p>
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<div class="section" id="delta">
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<h3>delta<a class="headerlink" href="#delta" title="Permalink to this headline"></a></h3>
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<p>The <em>delta</em> colormap is diverging from darker blues to just off-white through shades of yellow green and could be used to represent diverging velocity values around a critical value (usually zero). This colormap was inspired by <a class="reference external" href="http://www.francescasamsel.com/">Francesca Samsel&#8217;s</a> similar colormap, but generated from scratch using the viscm tool.</p>
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<div class="figure" id="id17">
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<div class="figure" id="id18">
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<a class="reference external image-reference" href="https://www.instagram.com/p/BGPoO-0Ryg8/"><img alt="https://pbs.twimg.com/media/CkIWDFRWkAEdArC.jpg" src="https://pbs.twimg.com/media/CkIWDFRWkAEdArC.jpg" /></a>
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<p class="caption"><span class="caption-text">From plotly.</span></p>
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</div>
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<div class="figure" id="id18">
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<div class="figure" id="id19">
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<a class="reference external image-reference" href="http://pong.tamu.edu/~kthyng/movies/txla_plots/u/2010.mp4"><img alt="http://pong.tamu.edu/~kthyng/movies/txla_plots/u/2010-07-30T00.png" src="http://pong.tamu.edu/~kthyng/movies/txla_plots/u/2010-07-30T00.png" /></a>
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<p class="caption"><span class="caption-text">Model output in the northwest Gulf of Mexico from the Physical Oceanography Numerical Group (PONG) at Texas A&amp;M.</span></p>
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