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agro932.md

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@@ -132,7 +132,7 @@ title: AGRO-932 Biometrical genetics and plant breeding
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### **Week 10**: Breeding population means and variances
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### **Week 11**: Breeding population means and variances
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- 04-01 (Tue): [_Lab_] Compute phenotypic values and variances
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- [[HTML](https://jyanglab.com/slides/2025-agro932/w10lab.html#1)]
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- [[HTML](https://jyanglab.com/slides/2025-agro932/w10class_variance.html#1)]
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### **Week 11**: Mating designs and Estimating Genetic Variances
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### **Week 12**: Mating designs and Estimating Genetic Variances
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- 04-08 (Tue): [_Lecture_] Mating design
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- __[Bernardo, Chapter 7]__ or __[Lynch and Walsh, Chapter 18]__
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- [[HTML](https://jyanglab.com/slides/2025-agro932/w11class.html#1)]
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- 04-10 (Thu): [_Lab_] Genetics variances calculation
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- [[HTML](https://jyanglab.com/slides/2025-agro932/w11lab_2022.html#1)]
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### **Week 12**: Best linear unbiased prediction
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### **Week 13**: Best linear unbiased prediction
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- 04-15 (Tue): [_Lecture_] BLUP introduction and Matrix operations
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- __[Bernardo, Chapter 10]__ or __[Lynch and Walsh, Chapter 8]__
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- [[HTML](https://jyanglab.com/slides/2025-agro932//w12class_blup1.html)]
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- 04-17 (Thu): [_Lab_] BLUP calculation for breeding populations
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- [[HTML](https://jyanglab.com/slides/2025-agro932//w12class_blup2.html)]
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### **Week 13**: Genome-enabled selection
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### **Week 14**: Genome-enabled selection
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- 04-22 (Tue): [_Lecture_] Genomic selection
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- __[Bernardo, Chapter 11]__
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- [[HTML](https://jyanglab.com/slides/2025-agro932/w13class_gs1.html)]
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- 04-24 (Thu): [_Lab_] Genomic selection in practice (1)
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- [[HTML](https://jyanglab.com/slides/2025-agro932/w13lab_gs2.html)]
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<!--
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### **Week 14**: GS and GWAS via mixed models
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- 04-19 (Tue): [_Lab_] Genomic selection in practice (2)
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### **Week 15**: GS and GWAS via mixed models
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- 04-29 (Tue): [_Lab_] Genomic selection in practice (2)
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- __[Canvas materials]__ and [[HTML](https://jyanglab.com/slides/2022-agro932/w14lab_gs3.html)]
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- 04-21 (Thu): [_Lecture_] Genome-wide association study
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- 05-01 (Thu): [_Lecture_] Genome-wide association study
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- __[Bernardo, Chapter 11]__
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- [[HTML](https://jyanglab.com/slides/2022-agro932/w14class_gwas1.html)]
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### **Week 15**: Association mapping via mixed models
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- 04-26 (Tue): [_Lab1_] GWAS in practice (1)
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### **Week 16**: Association mapping via mixed models
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- 05-06 (Tue): [_Lab1_] GWAS in practice (1)
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- [[Zhao et al., 2011](https://www.nature.com/articles/ncomms1467)]
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- [[HTML](https://jyanglab.com/slides/2022-agro932/w15lab_gwas2.html)]
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- 04-28 (Thu): [_Lab2_] GWAS in practice (2)
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- 05-08 (Thu): [_Lab2_] GWAS in practice (2)
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- [[HTML](https://jyanglab.com/slides/2022-agro932/w15lab_gwas3.html)]
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