Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on May 30, 2024

• bump to v3.2.4

  js2264

  committed
  e2f1b1a

  Copy full SHA for e2f1b1a

• fix: two modules imported as `hcs`

  js2264

  committed
  343d58e

  Copy full SHA for 343d58e

Commits on May 16, 2024

• Merge pull request #83 from nmendiboure/dev

  Show description for 9f04d34
  cmdoret

  authored
  9f04d34

  Copy full SHA for 9f04d34

• changed regex pattern for fastq quality filter

  nmendiboure

  committed
  4a24a06

  Copy full SHA for 4a24a06

Commits on May 13, 2024

• bump to v3.2.3

  js2264

  committed
  6521756

  Copy full SHA for 6521756

• fix: pairtools sort works with version >= 1.1.0

  js2264

  committed
  60b61f3

  Copy full SHA for 60b61f3

Commits on Feb 19, 2024

• fix: stats work when starting with bam

  js2264

  committed
  2f2145a

  Copy full SHA for 2f2145a

Commits on Feb 16, 2024

• fix: do not write stats into new file with stats CLI

  js2264

  committed
  e258750

  Copy full SHA for e258750

• feat: add stats to CLI

  js2264

  committed
  b6ebedb

  Copy full SHA for b6ebedb

• fix: typo in stats module

  js2264

  committed
  f32e9fe

  Copy full SHA for f32e9fe

Commits on Feb 15, 2024

• 3.2.2 (#80)

  Show description for 3ebe602
  js2264

  authored
  3ebe602

  Copy full SHA for 3ebe602

Commits on Oct 2, 2023

• fix: avoid removesuffix as it's only 3.9+

  js2264

  committed
  3e7987e

  Copy full SHA for 3e7987e

Commits on Sep 6, 2023

• bump to v3.2.1

  js2264

  committed
  b44fbed

  Copy full SHA for b44fbed

• docker: switch to micromamba in Dockerfile

  js2264

  committed
  2d0d66b

  Copy full SHA for 2d0d66b

• fix: remove ungzipped pairs file

  js2264

  committed
  3d51256

  Copy full SHA for 3d51256

• doc: add recommended command at the end of pipeline help docopt

  js2264

  committed
  a5b89b4

  Copy full SHA for a5b89b4

• fix: checking number of reads in fastq

  js2264

  committed
  8f69794

  Copy full SHA for 8f69794

Commits on Sep 4, 2023

• feat: sort and compress final pairs with pairtools

  js2264

  committed
  55fe4f2

  Copy full SHA for 55fe4f2

• fix: exclude only if not None

  js2264

  committed
  102e662

  Copy full SHA for 102e662

Commits on Aug 31, 2023

• Merge pull request #77 from koszullab/3.2.0

  Show description for b6b5d25
  js2264

  authored
  b6b5d25

  Copy full SHA for b6b5d25

• bump to v3.2.0

  js2264

  committed
  2d32875

  Copy full SHA for 2d32875

Commits on Aug 29, 2023

• Merge branches '3.2.0' and '3.2.0' of github.com:koszullab/hicstuff into 3.2.0

  js2264

  committed
  c45d628

  Copy full SHA for c45d628

• tests

  js2264

  committed
  dd4dbad

  Copy full SHA for dd4dbad

• Merge pull request #78 from koszullab/GHA/micromamba

  Show description for c5e71eb
  js2264

  authored
  c5e71eb

  Copy full SHA for c5e71eb

• GHA: revamp with micromamba

  js2264

  committed
  786aed0

  Copy full SHA for 786aed0

• fix: cutsite doc

  js2264

  committed
  70771a5

  Copy full SHA for 70771a5

• feat: add --exclude to pipeline to exclude chromosoms from generated cool matrix

  js2264

  committed
  5963b24

  Copy full SHA for 5963b24

Commits on Aug 28, 2023

• fix: added check for number of fastq/bam entries in each file

  js2264

  committed
  a75f2c1

  Copy full SHA for a75f2c1

• fix: np.array error from updated numpy

  js2264

  committed
  3299ffb

  Copy full SHA for 3299ffb

Commits on Aug 24, 2023

• test: more tests for binning/zoomify/balance combinations

  js2264

  committed
  f3dffc5

  Copy full SHA for f3dffc5

• fix: make sure final pairs file is retained

  js2264

  committed
  58cc0b0

  Copy full SHA for 58cc0b0

• fix: workflow to bin -> zoomify and/or balance

  js2264

  committed
  77f508c

  Copy full SHA for 77f508c

• feat: switch to `mat_fmt=cool` by default (implying --zoomify & default balancing)

  js2264

  committed
  70382ea

  Copy full SHA for 70382ea

• bump to v3.1.7

  js2264

  committed
  cb8d3bd

  Copy full SHA for cb8d3bd

• Merge pull request #76 from js2264/master

  Show description for 00f37df
  js2264

  authored
  00f37df

  Copy full SHA for 00f37df

Pagination

Previous

Next