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rpodcastrpodcast
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experiement with docker-compose
1 parent 268d86c commit 90a90b8

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‎.devcontainer/Dockerfile‎

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FROM rocker/r-ver:4.1.3
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# Options for setup script
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ARG INSTALL_ZSH="false"
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ARG INSTALL_FISH="true"
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ARG UPGRADE_PACKAGES="true"
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ARG USERNAME
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ARG QUARTO_VERSION=latest
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ARG USER_UID=1000
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ARG USER_GID=$USER_UID
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# Remove the docker user since I don't need it for VSCode containers
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#RUN groupmod docker --gid 1005 \
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# && usermod --uid 1005 docker
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# Install needed packages and setup non-root user. Use a separate RUN statement to add your own dependencies.
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COPY library-scripts/*.sh /tmp/library-scripts/
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RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
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&& /bin/bash /tmp/library-scripts/common-debian.sh "${INSTALL_ZSH}" "${INSTALL_FISH}" "${USERNAME}" "${USER_UID}" "${USER_GID}" "${UPGRADE_PACKAGES}" \
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&& apt-get -y install libzip-dev \
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&& apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/*
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# [Optional] Uncomment this section to install additional OS packages.
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# key dependencies for certain R packages
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RUN apt-get update \
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&& export DEBIAN_FRONTEND=noninteractive \
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&& apt-get -y install --no-install-recommends software-properties-common libssl-dev libxml2-dev libcurl4-openssl-dev python3-pip pandoc \
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&& apt-get -y install --no-install-recommends software-properties-common wget libssl-dev libxml2-dev libcurl4-openssl-dev python3-pip pandoc libzip-dev \
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&& apt-get -y install --no-install-recommends libfreetype6-dev libfontconfig1-dev tk \
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&& apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/*
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@@ -55,15 +39,11 @@ RUN apt-get update \
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RUN echo "RENV_PATHS_CACHE=/renv/cache" >> /usr/local/lib/R/etc/Renviron
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# copy the modified .Rprofile template to the renv cache
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COPY library-scripts/.Rprofile-vscode /renv/.Rprofile-vscode
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#COPY library-scripts/.Rprofile-vscode /renv/.Rprofile-vscode
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# [Optional] Uncomment this section to add Quarto to the container
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# customize version number as appropriate
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RUN /rocker_scripts/install_quarto.sh
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#RUN curl -L https://github.com/quarto-dev/quarto-cli/releases/download/v0.9.201/quarto-0.9.201-linux-amd64.deb -o /tmp/quarto.deb
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#RUN apt-get -y install ./tmp/quarto.deb
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# [Optional] Uncomment this section to add Hugo to the container
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# Customize version number as appropriate
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#RUN curl -L https://github.com/gohugoio/hugo/releases/download/v0.87.0/hugo_extended_0.87.0_Linux-64bit.deb -o /tmp/hugo.deb

‎.devcontainer/devcontainer.json‎

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// https://github.com/microsoft/vscode-dev-containers/tree/v0.134.1/containers/r
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{
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"name": "R",
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//"dockerComposeFile": "docker-compose.yml",
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//"workspaceFolder": "/workspace",
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//"service": "vscode",
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"build": {
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"dockerfile": "Dockerfile",
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"args": {
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//"source=/media/media_drive1/obs_files/audio_assets/soundboard_files,target=/soundboard_files,type=bind,consistency=cached",
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"source=/opt/local/renv/cache,target=/renv/cache,type=bind,consistency=cached"
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],
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"features": {
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"common": {
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"username": "${localEnv:USER}",
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"uid": "1000",
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"gid": "1000",
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"installZsh": false,
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"installOhMyZsh": false,
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"upgradePackages": true,
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"nonFreePackages": true
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},
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"fish": "latest"
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},
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// Configure environment variables for audio sound server if needed
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// You can leave these commented out or delete if you are not linking the contianer to a linux sound system
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//"containerEnv": {

‎.devcontainer/docker-compose.yml‎

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version: '3.4'
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services:
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vscode:
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build:
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context: .
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dockerfile: Dockerfile
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args:
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USERNAME: ${USER}
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QUARTO_VERSION: ${QUARTO_VERSION}
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user: ${USER}
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volumes:
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- ..:/workspace:cached
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- ${RENV_PATHS_CACHE_HOST}:/renv/cache
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cap_add:
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- SYS_PTRACE
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security_opt:
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- seccomp:unconfined
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command: sleep infinity
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env_file: .env
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rstudioquarto:
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build:
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context: ./rstudio_docker
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args:
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S6_VERSION: ${S6_VERSION}
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RSTUDIO_VERSION: ${RSTUDIO_VERSION}
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QUARTO_VERSION: ${QUARTO_VERSION}
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container_name: ${CONTAINER_NAME}
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volumes:
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- ${VOLUME_PATH}:${VOLUME_PATH}
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unless-stopped
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ports:
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- ${LOCAL_PORT}:8787
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env_file: .env
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env_file: .env

‎.devcontainer/vscode_docker/Dockerfile‎

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###################################################################################################################
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# Adapted from https://github.com/microsoft/vscode-dev-containers/blob/master/containers/r/.devcontainer/Dockerfile
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# licence: MIT
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###################################################################################################################
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FROM rocker/r-ver:4.1.3
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# Options for setup script
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ARG USERNAME
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ARG QUARTO_VERSION=latest
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# [Optional] Uncomment this section to install additional OS packages.
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# key dependencies for certain R packages
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RUN apt-get update \
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&& export DEBIAN_FRONTEND=noninteractive \
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&& apt-get -y install --no-install-recommends software-properties-common wget libssl-dev libxml2-dev libcurl4-openssl-dev python3-pip pandoc libzip-dev \
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&& apt-get -y install --no-install-recommends libfreetype6-dev libfontconfig1-dev tk \
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&& apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/*
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# install R packages needed for VSCode interaction and package management
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RUN install2.r languageserver renv remotes httpgd
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# install radian via python and pip3
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RUN apt-get update \
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&& export DEBIAN_FRONTEND=noninteractive \
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&& apt-get -y install --no-install-recommends python3-setuptools
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RUN pip3 install radian
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# install dot net core runtime for the R Tools plugin
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RUN wget https://packages.microsoft.com/config/ubuntu/20.04/packages-microsoft-prod.deb -O /tmp/packages-microsoft-prod.deb \
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&& dpkg -i /tmp/packages-microsoft-prod.deb
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RUN apt-get update \
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&& apt-get -y install --no-install-recommends apt-transport-https \
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&& apt-get -y install --no-install-recommends dotnet-sdk-3.1
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# ensure that the renv package cache env var is accessible in default R installation
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RUN echo "RENV_PATHS_CACHE=/renv/cache" >> /usr/local/lib/R/etc/Renviron
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# copy the modified .Rprofile template to the renv cache
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COPY library-scripts/.Rprofile-vscode /renv/.Rprofile-vscode
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# [Optional] Uncomment this section to add Quarto to the container
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RUN /rocker_scripts/install_quarto.sh
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# [Optional] Uncomment this section to add Hugo to the container
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# Customize version number as appropriate
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#RUN curl -L https://github.com/gohugoio/hugo/releases/download/v0.87.0/hugo_extended_0.87.0_Linux-64bit.deb -o /tmp/hugo.deb
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#RUN apt-get -y install ./tmp/hugo.deb
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# [Optional] Uncomment this section to add addtional system dependencies needed for project
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# RUN apt-get update \
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# && export DEBIAN_FRONTEND=noninteractive \
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# && apt-get -y install --no-install-recommends ---packages list----
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# [Optional] Uncomment this section for linking a local pusleaudio sound system on a linux host
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# to the container.
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#RUN apt-get update \
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# && export DEBIAN_FRONTEND=noninteractive \
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# && apt-get -y install --no-install-recommends libpulse0 libasound2 libasound2-plugins pulseaudio-utils
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# install obs-cli (Go version)
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# https://github.com/muesli/obs-cli/releases
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#ADD https://github.com/muesli/obs-cli/releases/download/v0.4.0/obs-cli_0.4.0_linux_x86_64.tar.gz /obs-cli-linux.tar.gz
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#RUN tar -zxvf obs-cli-linux.tar.gz
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#RUN cp /obs-cli /usr/local/bin/obs-cli
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#RUN chmod 755 /usr/local/bin/obs-cli
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# install obs-cli (Javascript version)
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# https://github.com/leafac/obs-cli/releases
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#ADD https://github.com/leafac/obs-cli/releases/download/v2.2.3/obs-cli-linux /usr/local/bin/obs-cli-js
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#RUN chmod 755 /usr/local/bin/obs-cli-js
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# [Optional] Set the default user. Omit if you want to keep the default as root.
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USER $USERNAME

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