Closed as not planned
Description
Bug summary
When numpy is compiled with Intel classic compilers (v2021.5.0) on Rocky 8.8 Linux, matplotlib v3.8.4 (also compiled with Intel) is unable to generate a basic plot.
Code for reproduction
Actual outcome
$ python simple_plot.py
Traceback (most recent call last):
File "/scratch1/NCEPDEV/global/David.Huber/simple_plot.py", line 23, in <module>
fig.savefig("test.png")
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/figure.py", line 3390, in savefig
self.canvas.print_figure(fname, **kwargs)
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/backend_bases.py", line 2187, in print_figure
result = print_method(
^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/backend_bases.py", line 2043, in <lambda>
print_method = functools.wraps(meth)(lambda *args, **kwargs: meth(
^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/backends/backend_agg.py", line 497, in print_png
self._print_pil(filename_or_obj, "png", pil_kwargs, metadata)
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/backends/backend_agg.py", line 445, in _print_pil
FigureCanvasAgg.draw(self)
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/backends/backend_agg.py", line 388, in draw
self.figure.draw(self.renderer)
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/artist.py", line 95, in draw_wrapper
result = draw(artist, renderer, *args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/artist.py", line 72, in draw_wrapper
return draw(artist, renderer)
^^^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/figure.py", line 3154, in draw
mimage._draw_list_compositing_images(
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/image.py", line 132, in _draw_list_compositing_images
a.draw(renderer)
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/artist.py", line 72, in draw_wrapper
return draw(artist, renderer)
^^^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/axes/_base.py", line 3034, in draw
self._update_title_position(renderer)
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/axes/_base.py", line 2978, in _update_title_position
ax.yaxis.get_tightbbox(renderer) # update offsetText
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/axis.py", line 1334, in get_tightbbox
ticks_to_draw = self._update_ticks()
^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/axis.py", line 1275, in _update_ticks
major_locs = self.get_majorticklocs()
^^^^^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/axis.py", line 1495, in get_majorticklocs
return self.major.locator()
^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/ticker.py", line 2142, in __call__
return self.tick_values(vmin, vmax)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/ticker.py", line 2150, in tick_values
locs = self._raw_ticks(vmin, vmax)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/ticker.py", line 2088, in _raw_ticks
nbins = np.clip(self.axis.get_tick_space(),
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/scratch1/NCEPDEV/global/David.Huber/SPACK/ss_matplotlib/envs/matplotlib_intel/install/intel/2021.5.0/py-matplotlib-3.8.0-rnemqcl/lib/python3.11/site-packages/matplotlib/axis.py", line 2764, in get_tick_space
return int(np.floor(length / size))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: cannot convert float NaN to integerExpected outcome
Additional information
This build is accomplished via spack stack (jcsda/spack-stack), but is likely reproducible via spack. Attached is the output of spack concretize.
concretize.log
And here is the spack.yaml used to build the environment:
spack:
concretizer:
unify: when_possible
view: false
include:
- site
- common
definitions:
- compilers: ['%intel']
- packages:
- [email protected]
- [email protected]
specs:
- matrix:
- [$packages]
- [$compilers]
packages:
all:
prefer: ['%intel']The version of numpy that builds with this is 1.25.2.
This particular build was with matplotlib v3.8.0, but I have encountered the same issue with v3.8.4.
I have not tried v3.9.x or v3.10.x.
The issue is resolved if numpy v1.25.2 is installed via pip. After building this environment, lmod modules are generated. After loading the py-matplotlib and py-pip modules and unloading py-numpy, running the following generates the plot successfully:
#!/usr/bin/bash
python -m venv venv
source venv/bin/activate
pip install numpy=1.25.2
...
python simple_plot.pyOperating system
Rocky 8.8
Matplotlib Version
3.8.0-4
Matplotlib Backend
agg
Python version
3.11.7
Jupyter version
N/A
Installation
from source (.tar.gz)
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