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Multiple ImportErrors and ModuleNotFoundErrors when running test suite. #493

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TheChymera opened this issue May 4, 2022 · 2 comments
Open

Multiple ImportErrors and ModuleNotFoundErrors when running test suite. #493

TheChymera opened this issue May 4, 2022 · 2 comments

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@TheChymera
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This is the whole build and test log: https://ppb.chymera.eu/5492b9.log

Most of the errors seem to be related to intvol:

ERROR: Failure: ImportError (cannot import name 'intvol' from partially initialized module 'nipy.algorithms.statistics' (most likely due to a circular import) (/var/tmp/portage/sci-libs/nipy-0.5.0/work/nipy-0.5.0/nipy/algorithms/statistics/__init__.py))
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python3.9/site-packages/nose/failure.py", line 39, in runTest
    raise self.exc_val.with_traceback(self.tb)
  File "/usr/lib/python3.9/site-packages/nose/loader.py", line 418, in loadTestsFromName
    module = self.importer.importFromPath(
  File "/usr/lib/python3.9/site-packages/nose/importer.py", line 47, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib/python3.9/site-packages/nose/importer.py", line 94, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/usr/lib/python3.9/imp.py", line 234, in load_module
    return load_source(name, filename, file)
  File "/usr/lib/python3.9/imp.py", line 171, in load_source
    module = _load(spec)
  File "<frozen importlib._bootstrap>", line 711, in _load
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 850, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/var/tmp/portage/sci-libs/nipy-0.5.0/work/nipy-0.5.0/nipy/labs/spatial_models/tests/test_parcel.py", line 7, in <module>
    from nipy.algorithms.graph.field import field_from_coo_matrix_and_data
  File "/var/tmp/portage/sci-libs/nipy-0.5.0/work/nipy-0.5.0/nipy/algorithms/__init__.py", line 8, in <module>
    from . import statistics
  File "/var/tmp/portage/sci-libs/nipy-0.5.0/work/nipy-0.5.0/nipy/algorithms/statistics/__init__.py", line 9, in <module>
    from . import intvol, rft, onesample, formula
ImportError: cannot import name 'intvol' from partially initialized module 'nipy.algorithms.statistics' (most likely due to a circular import) (/var/tmp/portage/sci-libs/nipy-0.5.0/work/nipy-0.5.0/nipy/algorithms/statistics/__init__.py)

But there are others as well. I assume it's an issue with accessing its own modules somehow?
@effigies
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@TheChymera Does this persist with the latest master?

@effigies
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@TheChymera I can reproduce this by running from within the source directory. Moving to the src/ layout would resolve this, but you can also cd to some other directory before running tests with --pyargs nipy.

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@effigies @TheChymera