TEST: make specs

effigies · effigies · commit 78d580b61da0 · 2023-07-05T16:43:15.000-04:00
diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py b/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py
@@ -8,14 +8,17 @@ def test_ReconAll_inputs():
             argstr="-FLAIR %s",
             extensions=None,
             min_ver="5.3.0",
+            requires=["subject_id"],
         ),
         T1_files=dict(
             argstr="-i %s...",
+            requires=["subject_id"],
         ),
         T2_file=dict(
             argstr="-T2 %s",
             extensions=None,
             min_ver="5.3.0",
+            requires=["subject_id"],
         ),
         args=dict(
             argstr="%s",
@@ -33,6 +36,7 @@ def test_ReconAll_inputs():
         ),
         brainstem=dict(
             argstr="-brainstem-structures",
+            requires=["subject_id"],
         ),
         directive=dict(
             argstr="-%s",
@@ -52,14 +56,17 @@ def test_ReconAll_inputs():
         ),
         hemi=dict(
             argstr="-hemi %s",
+            requires=["subject_id"],
         ),
         hippocampal_subfields_T1=dict(
             argstr="-hippocampal-subfields-T1",
             min_ver="6.0.0",
+            requires=["subject_id"],
         ),
         hippocampal_subfields_T2=dict(
             argstr="-hippocampal-subfields-T2 %s %s",
             min_ver="6.0.0",
+            requires=["subject_id"],
         ),
         hires=dict(
             argstr="-hires",
@@ -77,6 +84,7 @@ def test_ReconAll_inputs():
         ),
         mprage=dict(
             argstr="-mprage",
+            requires=["subject_id"],
         ),
         mri_aparc2aseg=dict(
             xor=["expert"],
@@ -161,6 +169,7 @@ def test_ReconAll_inputs():
         ),
         subject_id=dict(
             argstr="-subjid %s",
+            xor=["base_template_id", "longitudinal_timepoint_id"],
         ),
         subjects_dir=dict(
             argstr="-sd %s",
diff --git a/nipype/interfaces/tests/test_auto_Dcm2nii.py b/nipype/interfaces/tests/test_auto_Dcm2nii.py
@@ -0,0 +1,107 @@
+# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
+from ..dcm2nii import Dcm2nii
+
+
+def test_Dcm2nii_inputs():
+    input_map = dict(
+        anonymize=dict(
+            argstr="-a",
+            usedefault=True,
+        ),
+        args=dict(
+            argstr="%s",
+        ),
+        collapse_folders=dict(
+            argstr="-c",
+            usedefault=True,
+        ),
+        config_file=dict(
+            argstr="-b %s",
+            extensions=None,
+            genfile=True,
+        ),
+        convert_all_pars=dict(
+            argstr="-v",
+            usedefault=True,
+        ),
+        date_in_filename=dict(
+            argstr="-d",
+            usedefault=True,
+        ),
+        environ=dict(
+            nohash=True,
+            usedefault=True,
+        ),
+        events_in_filename=dict(
+            argstr="-e",
+            usedefault=True,
+        ),
+        gzip_output=dict(
+            argstr="-g",
+            usedefault=True,
+        ),
+        id_in_filename=dict(
+            argstr="-i",
+            usedefault=True,
+        ),
+        nii_output=dict(
+            argstr="-n",
+            usedefault=True,
+        ),
+        output_dir=dict(
+            argstr="-o %s",
+            genfile=True,
+        ),
+        protocol_in_filename=dict(
+            argstr="-p",
+            usedefault=True,
+        ),
+        reorient=dict(
+            argstr="-r",
+        ),
+        reorient_and_crop=dict(
+            argstr="-x",
+            usedefault=True,
+        ),
+        source_dir=dict(
+            argstr="%s",
+            mandatory=True,
+            position=-1,
+            xor=["source_names"],
+        ),
+        source_in_filename=dict(
+            argstr="-f",
+            usedefault=True,
+        ),
+        source_names=dict(
+            argstr="%s",
+            copyfile=False,
+            mandatory=True,
+            position=-1,
+            xor=["source_dir"],
+        ),
+        spm_analyze=dict(
+            argstr="-s",
+            xor=["nii_output"],
+        ),
+    )
+    inputs = Dcm2nii.input_spec()
+
+    for key, metadata in list(input_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(inputs.traits()[key], metakey) == value
+
+
+def test_Dcm2nii_outputs():
+    output_map = dict(
+        bvals=dict(),
+        bvecs=dict(),
+        converted_files=dict(),
+        reoriented_and_cropped_files=dict(),
+        reoriented_files=dict(),
+    )
+    outputs = Dcm2nii.output_spec()
+
+    for key, metadata in list(output_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(outputs.traits()[key], metakey) == value
