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bench_function_base.py
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import numpy as np
from .common import Benchmark
try:
# SkipNotImplemented is available since 6.0
from asv_runner.benchmarks.mark import SkipNotImplemented
except ImportError:
SkipNotImplemented = NotImplementedError
class Linspace(Benchmark):
def setup(self):
self.d = np.array([1, 2, 3])
def time_linspace_scalar(self):
np.linspace(0, 10, 2)
def time_linspace_array(self):
np.linspace(self.d, 10, 10)
class Histogram1D(Benchmark):
def setup(self):
self.d = np.linspace(0, 100, 100000)
def time_full_coverage(self):
np.histogram(self.d, 200, (0, 100))
def time_small_coverage(self):
np.histogram(self.d, 200, (50, 51))
def time_fine_binning(self):
np.histogram(self.d, 10000, (0, 100))
class Histogram2D(Benchmark):
def setup(self):
self.d = np.linspace(0, 100, 200000).reshape((-1, 2))
def time_full_coverage(self):
np.histogramdd(self.d, (200, 200), ((0, 100), (0, 100)))
def time_small_coverage(self):
np.histogramdd(self.d, (200, 200), ((50, 51), (50, 51)))
def time_fine_binning(self):
np.histogramdd(self.d, (10000, 10000), ((0, 100), (0, 100)))
class Bincount(Benchmark):
def setup(self):
self.d = np.arange(80000, dtype=np.intp)
self.e = self.d.astype(np.float64)
def time_bincount(self):
np.bincount(self.d)
def time_weights(self):
np.bincount(self.d, weights=self.e)
class Mean(Benchmark):
param_names = ['size']
params = [[1, 10, 100_000]]
def setup(self, size):
self.array = np.arange(2 * size).reshape(2, size)
def time_mean(self, size):
np.mean(self.array)
def time_mean_axis(self, size):
np.mean(self.array, axis=1)
class Median(Benchmark):
def setup(self):
self.e = np.arange(10000, dtype=np.float32)
self.o = np.arange(10001, dtype=np.float32)
self.tall = np.random.random((10000, 20))
self.wide = np.random.random((20, 10000))
def time_even(self):
np.median(self.e)
def time_odd(self):
np.median(self.o)
def time_even_inplace(self):
np.median(self.e, overwrite_input=True)
def time_odd_inplace(self):
np.median(self.o, overwrite_input=True)
def time_even_small(self):
np.median(self.e[:500], overwrite_input=True)
def time_odd_small(self):
np.median(self.o[:500], overwrite_input=True)
def time_tall(self):
np.median(self.tall, axis=-1)
def time_wide(self):
np.median(self.wide, axis=0)
class Percentile(Benchmark):
def setup(self):
self.e = np.arange(10000, dtype=np.float32)
self.o = np.arange(21, dtype=np.float32)
def time_quartile(self):
np.percentile(self.e, [25, 75])
def time_percentile(self):
np.percentile(self.e, [25, 35, 55, 65, 75])
def time_percentile_small(self):
np.percentile(self.o, [25, 75])
class Select(Benchmark):
def setup(self):
self.d = np.arange(20000)
self.e = self.d.copy()
self.cond = [(self.d > 4), (self.d < 2)]
self.cond_large = [(self.d > 4), (self.d < 2)] * 10
def time_select(self):
np.select(self.cond, [self.d, self.e])
def time_select_larger(self):
np.select(self.cond_large, ([self.d, self.e] * 10))
def memoize(f):
_memoized = {}
def wrapped(*args):
if args not in _memoized:
_memoized[args] = f(*args)
return _memoized[args].copy()
return f
class SortGenerator:
# The size of the unsorted area in the "random unsorted area"
# benchmarks
AREA_SIZE = 100
# The size of the "partially ordered" sub-arrays
BUBBLE_SIZE = 100
small_limits = {
'bool': (0, 2),
'uint8': (0, 256),
'int8': (-128, 128),
'int16': (-32768, 32768),
'float16': (-1000, 1000),
}
@staticmethod
@memoize
def ordered_range(size, dtype):
"""
Returns an ordered array of the given size and dtype.
"""
if dtype in SortGenerator.small_limits:
arange = np.arange(*SortGenerator.small_limits[dtype], dtype=dtype)
return np.repeat(arange, size // arange.size + 1)[:size]
else:
return np.arange(size, dtype=dtype)
@staticmethod
@memoize
def random(size, dtype, rnd):
"""
Returns a randomly-shuffled array.
"""
arr = SortGenerator.ordered_range(size, dtype=dtype)
rnd = np.random.RandomState(1792364059)
rnd.shuffle(arr)
return arr
@staticmethod
@memoize
def ordered(size, dtype, rnd):
"""
Returns an ordered array.
"""
return SortGenerator.ordered_range(size, dtype=dtype)
@staticmethod
@memoize
def reversed(size, dtype, rnd):
"""
Returns an array that's in descending order.
"""
return SortGenerator.ordered_range(size, dtype=dtype)[::-1]
@staticmethod
@memoize
def uniform(size, dtype, rnd):
"""
Returns an array that has the same value everywhere.
"""
return np.ones(size, dtype=dtype)
@staticmethod
@memoize
def sorted_block(size, dtype, block_size, rnd):
"""
Returns an array with blocks that are all sorted.
"""
a = SortGenerator.ordered_range(size, dtype=dtype)
b = []
if size < block_size:
return a
block_num = size // block_size
for i in range(block_num):
b.extend(a[i::block_num])
return np.array(b)
class Sort(Benchmark):
"""
This benchmark tests sorting performance with several
different types of arrays that are likely to appear in
real-world applications.
"""
params = [
[True, False],
[True, False],
[
'float64',
'int64',
'float32',
'uint32',
'int32',
'int16',
'float16',
'uint8',
'int8',
'bool',
],
[
('random',),
('ordered',),
('reversed',),
('uniform',),
('sorted_block', 10),
('sorted_block', 100),
('sorted_block', 1000),
],
]
param_names = ['stable', 'descending', 'dtype', 'array_type']
# The size of the benchmarked arrays.
ARRAY_SIZE = 1000000
def setup(self, stable, descending, dtype, array_type):
rnd = np.random.RandomState(507582308)
array_class = array_type[0]
generate_array_method = getattr(SortGenerator, array_class)
self.arr = generate_array_method(self.ARRAY_SIZE, dtype, *array_type[1:], rnd)
if descending:
self.arr = self.arr[::-1]
self.arr = self.arr.copy()
def time_sort(self, stable, descending, dtype, array_type):
# Using np.sort(...) instead of arr.sort(...) because it makes a copy.
# This is important because the data is prepared once per benchmark, but
# used across multiple runs.
if descending:
np.sort(self.arr, stable=stable, descending=True)
else:
# for backward compatibility to NumPy 2.0
np.sort(self.arr, stable=stable)
def time_argsort(self, stable, descending, dtype, array_type):
if descending:
np.argsort(self.arr, stable=stable, descending=True)
else:
# for backward compatibility to NumPy 2.0
np.argsort(self.arr, stable=stable)
class Partition(Benchmark):
params = [
['float64', 'int64', 'float32', 'int32', 'int16', 'float16'],
[
('random',),
('ordered',),
('reversed',),
('uniform',),
('sorted_block', 10),
('sorted_block', 100),
('sorted_block', 1000),
],
[10, 100, 1000],
]
param_names = ['dtype', 'array_type', 'k']
# The size of the benchmarked arrays.
ARRAY_SIZE = 100000
def setup(self, dtype, array_type, k):
rnd = np.random.seed(2136297818)
array_class = array_type[0]
self.arr = getattr(SortGenerator, array_class)(
self.ARRAY_SIZE, dtype, *array_type[1:], rnd)
def time_partition(self, dtype, array_type, k):
temp = np.partition(self.arr, k)
def time_argpartition(self, dtype, array_type, k):
temp = np.argpartition(self.arr, k)
class SortWorst(Benchmark):
def setup(self):
# quicksort median of 3 worst case
self.worst = np.arange(1000000)
x = self.worst
while x.size > 3:
mid = x.size // 2
x[mid], x[-2] = x[-2], x[mid]
x = x[:-2]
def time_sort_worst(self):
np.sort(self.worst)
# Retain old benchmark name for backward compatibility
time_sort_worst.benchmark_name = "bench_function_base.Sort.time_sort_worst"
class Where(Benchmark):
def setup(self):
self.d = np.arange(20000)
self.d_o = self.d.astype(object)
self.e = self.d.copy()
self.e_o = self.d_o.copy()
self.cond = (self.d > 5000)
size = 1024 * 1024 // 8
rnd_array = np.random.rand(size)
self.rand_cond_01 = rnd_array > 0.01
self.rand_cond_20 = rnd_array > 0.20
self.rand_cond_30 = rnd_array > 0.30
self.rand_cond_40 = rnd_array > 0.40
self.rand_cond_50 = rnd_array > 0.50
self.all_zeros = np.zeros(size, dtype=bool)
self.all_ones = np.ones(size, dtype=bool)
self.rep_zeros_2 = np.arange(size) % 2 == 0
self.rep_zeros_4 = np.arange(size) % 4 == 0
self.rep_zeros_8 = np.arange(size) % 8 == 0
self.rep_ones_2 = np.arange(size) % 2 > 0
self.rep_ones_4 = np.arange(size) % 4 > 0
self.rep_ones_8 = np.arange(size) % 8 > 0
def time_1(self):
np.where(self.cond)
def time_2(self):
np.where(self.cond, self.d, self.e)
def time_2_object(self):
# object and byteswapped arrays have a
# special slow path in the where internals
np.where(self.cond, self.d_o, self.e_o)
def time_2_broadcast(self):
np.where(self.cond, self.d, 0)
def time_all_zeros(self):
np.where(self.all_zeros)
def time_random_01_percent(self):
np.where(self.rand_cond_01)
def time_random_20_percent(self):
np.where(self.rand_cond_20)
def time_random_30_percent(self):
np.where(self.rand_cond_30)
def time_random_40_percent(self):
np.where(self.rand_cond_40)
def time_random_50_percent(self):
np.where(self.rand_cond_50)
def time_all_ones(self):
np.where(self.all_ones)
def time_interleaved_zeros_x2(self):
np.where(self.rep_zeros_2)
def time_interleaved_zeros_x4(self):
np.where(self.rep_zeros_4)
def time_interleaved_zeros_x8(self):
np.where(self.rep_zeros_8)
def time_interleaved_ones_x2(self):
np.where(self.rep_ones_2)
def time_interleaved_ones_x4(self):
np.where(self.rep_ones_4)
def time_interleaved_ones_x8(self):
np.where(self.rep_ones_8)