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Error: Import Numpy and Subsequently Pandas with python3.9 on MacOS builds wheels #17475

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hannahxwood opened this issue Oct 7, 2020 · 3 comments
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Error: Import Numpy and Subsequently Pandas with python3.9 on MacOS builds wheels #17475

hannahxwood opened this issue Oct 7, 2020 · 3 comments

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@hannahxwood
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I do not know how to fix a buggy Accelerate backend..

Input:
import numpy as np
or
import pandas as pd

Output:

init_dgelsd failed init
Traceback (most recent call last):
  File "<input>", line 1, in <module>
  File "/Applications/PyCharm.app/Contents/plugins/python/helpers/pydev/_pydev_bundle/pydev_import_hook.py", line 21, in do_import
    module = self._system_import(name, *args, **kwargs)
  File "/Users/hannahwood/PycharmProjects/pythonProject/venv/lib/python3.9/site-packages/pandas/__init__.py", line 11, in <module>
    __import__(dependency)
  File "/Applications/PyCharm.app/Contents/plugins/python/helpers/pydev/_pydev_bundle/pydev_import_hook.py", line 21, in do_import
    module = self._system_import(name, *args, **kwargs)
  File "/Users/hannahwood/PycharmProjects/pythonProject/venv/lib/python3.9/site-packages/numpy/__init__.py", line 286, in <module>
    raise RuntimeError(msg)
RuntimeError: Polyfit sanity test emitted a warning, most likely due to using a buggy Accelerate backend. If you compiled yourself, see site.cfg.example for information. Otherwise report this to the vendor that provided NumPy.
RankWarning: Polyfit may be poorly conditioned
@hannahxwood hannahxwood changed the title Import Numpy and Subsequently Pandas Error: Import Numpy and Subsequently Pandas Oct 7, 2020
@mattip
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mattip commented Oct 7, 2020

Where did you get your python and NumPy from? homebrew? PyPI? If you are building your own, you should find some hints in the error message. If not we need more information.

@hannahxwood
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hannahxwood commented Oct 7, 2020 via email •
edited by mattip
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@mattip mattip changed the title Error: Import Numpy and Subsequently Pandas Error: Import Numpy and Subsequently Pandas with python3.9 on MacOS builds wheels Oct 7, 2020
@mattip
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mattip commented Oct 7, 2020

You will have to wait a few weeks for the ecosystem to catch up. I changed the title to reflect the new information. Closing, duplicate of gh-17482

@mattip mattip closed this as completed Oct 7, 2020
@mdickinson mdickinson mentioned this issue Oct 13, 2020
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@mattip @hannahxwood