Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Aug 31, 2013

• changed output of strand contingency table to use same reads as used in the strand specific lod scores. the overall lod score and the old contingency table used the same data. However, if there w…

  Show description for 10b1ba9
  kcibul

  committed
  10b1ba9

  Copy full SHA for 10b1ba9

Commits on Aug 29, 2013

• fixed describe to pull tags as well

  kcibul

  committed
  6fe4f4c

  Copy full SHA for 6fe4f4c

• New GATK default behavior is to output all @Output annotations to stdout by default. This was happening with the option VCF output. Changed the defaultToStdout to false

  kcibul

  committed
  e263cfa

  Copy full SHA for e263cfa

Commits on Aug 27, 2013

• Merge branch 'master' of github.com:broadinstitute/mutect

  kcibul

  committed
  00f0b6b

  Copy full SHA for 00f0b6b

• used git describe --tags to allow for use of non-annotated tags in version numbering

  kcibul

  committed
  eea6813

  Copy full SHA for eea6813

• Update README.md

  kcibul

  committed
  c9b8ba8

  Copy full SHA for c9b8ba8

Commits on Aug 23, 2013

• updated script for releasing MuTect distribution from GitHub

  kcibul

  committed
  fd146fe

  Copy full SHA for fd146fe

Commits on Aug 22, 2013

• compatible with GATK 2.7.1 (includes bugfix for MAPQ > 127 causing overflows in MuTect)

  kcibul

  committed
  8f5ae96

  Copy full SHA for 8f5ae96

Commits on Aug 16, 2013

• updates to be compatible with Java 7

  kcibul

  committed
  f07a1d1

  Copy full SHA for f07a1d1

Commits on Aug 13, 2013

• fixed small typo in license terms

  kcibul

  committed
  85cb5a1

  Copy full SHA for 85cb5a1

Commits on Jul 31, 2013

• initial regression test code

  kcibul

  committed
  0876df3

  Copy full SHA for 0876df3

• updated to latest GATK testing framework -- placeholder for more granular unit tests

  kcibul

  committed
  3d7b5a8

  Copy full SHA for 3d7b5a8

Commits on Jul 25, 2013

• removed SomaticSpike from packaging

  kcibul

  committed
  31dfb85

  Copy full SHA for 31dfb85

• removing unused simulation code

  kcibul

  committed
  da48c15

  Copy full SHA for da48c15

• Merge pull request #4 from lbergelson/master

  Show description for 30f6e38
  kcibul

  committed
  30f6e38

  Copy full SHA for 30f6e38

• Adjusted build.xml to account for the removal of SomaticSpike.

  lbergelson

  committed
  58a9e03

  Copy full SHA for 58a9e03

• Minor fix to spacing in build.xml.

  lbergelson

  committed
  ea8d65f

  Copy full SHA for ea8d65f

• Removed SomaticSpike walker and related files.

  Show description for 5a3b5f2
  lbergelson

  committed
  5a3b5f2

  Copy full SHA for 5a3b5f2

• Merge branch 'master' into lmaster

  lbergelson

  committed
  9236a48

  Copy full SHA for 9236a48

Commits on Jul 24, 2013

• added micro (10 exon) and small (200+ exon) regression data, gold results and infrastructure

  kcibul

  committed
  0d8dfd9

  Copy full SHA for 0d8dfd9

• refactoring code, removed improper pairs output field as it was unused

  kcibul

  committed
  7148229

  Copy full SHA for 7148229

Commits on Jul 14, 2013

• refactoring of release scripts post-git migration

  kcibul

  committed
  d208340

  Copy full SHA for d208340

Commits on Jul 12, 2013

• Merge branch 'master' of github.com:broadinstitute/mutect

  kcibul

  committed
  f1747b2

  Copy full SHA for f1747b2

• refactoring of release scripts to GIT

  kcibul

  committed
  3814f57

  Copy full SHA for 3814f57

Commits on Jul 1, 2013

• Modified the build.xml file so that the LibraryReadFilter is included in the build.

  lbergelson

  committed
  e9e917e

  Copy full SHA for e9e917e

Commits on Jun 28, 2013

• Merge pull request #3 from lbergelson/master

  Show description for 2aa00fa
  kcibul

  committed
  2aa00fa

  Copy full SHA for 2aa00fa

• Merge branch 'master' of github.com:broadinstitute/mutect

  lbergelson

  committed
  9929c45

  Copy full SHA for 9929c45

• Making fixes to SomaticSpike.

  Show description for a33f771
  lbergelson

  committed
  a33f771

  Copy full SHA for a33f771

Commits on Jun 27, 2013

• * removed TreeReducible as we currently do not meet the required contract

  kcibul

  committed
  9205157

  Copy full SHA for 9205157

Commits on Jun 24, 2013

• updated license with actual text rather than a pointer

  kcibul

  committed
  1ff997c

  Copy full SHA for 1ff997c

• * added logging of version information to console during run

  kcibul

  committed
  5c87c78

  Copy full SHA for 5c87c78

• * refactored output approach for call stats

  Show description for f53f7ba
  kcibul

  committed
  f53f7ba

  Copy full SHA for f53f7ba

Commits on Jun 14, 2013

• minor cleanup

  kcibul

  committed
  b8fdc5d

  Copy full SHA for b8fdc5d

• minor edits to readme

  kcibul

  committed
  a1a48e9

  Copy full SHA for a1a48e9

• updated Markdown

  kcibul

  committed
  f6a9be8

  Copy full SHA for f6a9be8

Pagination

Previous

Next