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add R isosurface doc
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‎_posts/r/3d/2019-04-16-isosurface.Rmd

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---
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title: 3D Isosurface Plots | Plotly
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name: 3D Isosurface Plots
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permalink: r/3d-isosurface-plots/
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description: How to create 3D isosurface plots with Plotly.
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layout: base
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thumbnail: thumbnail/isosurface.jpg
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language: r
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has_thumbnail: true
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display_as: 3d_charts
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order: 20
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output:
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html_document:
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keep_md: true
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---
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```{r, echo = FALSE, message=FALSE}
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knitr::opts_chunk$set(message = FALSE, warning=FALSE)
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Sys.setenv("plotly_username"="RPlotBot")
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Sys.setenv("plotly_api_key"="q0lz6r5efr")
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```
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### New to Plotly?
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Plotly's R library is free and open source!<br>
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[Get started](https://plot.ly/r/getting-started/) by downloading the client and [reading the primer](https://plot.ly/r/getting-started/).<br>
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You can set up Plotly to work in [online](https://plot.ly/r/getting-started/#hosting-graphs-in-your-online-plotly-account) or [offline](https://plot.ly/r/offline/) mode.<br>
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We also have a quick-reference [cheatsheet](https://images.plot.ly/plotly-documentation/images/r_cheat_sheet.pdf) (new!) to help you get started!
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### Version Check
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Version 4 of Plotly's R package is now [available](https://plot.ly/r/getting-started/#installation)!<br>
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Check out [this post](http://moderndata.plot.ly/upgrading-to-plotly-4-0-and-above/) for more information on breaking changes and new features available in this version.
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```{r}
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library(plotly)
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packageVersion('plotly')
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```
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#### Basic Isosurface Plot
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```{r, results = 'hide'}
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library(plotly)
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p <- plot_ly(
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type='isosurface',
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x = c(0,0,0,0,1,1,1,1),
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y = c(1,0,1,0,1,0,1,0),
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z = c(1,1,0,0,1,1,0,0),
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value = c(1,2,3,4,5,6,7,8),
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isomin=2,
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isomax=6
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)
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# Create a shareable link to your chart
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# Set up API credentials: https://plot.ly/r/getting-started
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chart_link = api_create(p, filename="isosurface-basic")
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chart_link
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```
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```{r, echo=FALSE}
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chart_link
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```
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#### Isosurface with Additional Slices
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```{r, results = 'hide'}
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library(plotly)
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df <- read.csv('https://raw.githubusercontent.com/plotly/datasets/master/clebsch-cubic.csv')
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p <- plot_ly(
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df,
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type='isosurface',
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x = ~x,
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y = ~y,
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z = ~z,
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value = ~value,
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isomin = -100,
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isomax = 100,
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colorscale='RdBu',
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surface = list(show = TRUE, count = 1),
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slices = list(z = list(
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show = TRUE, locations = c(-0.3, 0.5)
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)),
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caps = list(
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x = list(show = FALSE),
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y = list(show = FALSE),
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z = list(show = FALSE)
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)
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) %>%
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layout(
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margin=list(t = 0, l = 0, b = 0),
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scene=list(
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camera=list(
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eye=list(
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x = 1.86,
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y = 0.61,
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z = 0.98
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)
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)
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)
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)
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# Create a shareable link to your chart
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# Set up API credentials: https://plot.ly/r/getting-started
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chart_link = api_create(p, filename="isosurface-slices")
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chart_link
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```
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```{r, echo=FALSE}
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chart_link
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```
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#### Multiple Isosurfaces with Caps
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```{r, results = 'hide'}
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library(plotly)
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df <- read.csv('https://raw.githubusercontent.com/plotly/datasets/master/clebsch-cubic.csv')
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p <- plot_ly(
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df,
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type='isosurface',
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x = ~x,
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y = ~y,
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z = ~z,
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value = ~value,
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isomin = -10,
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isomax = 10,
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surface = list(show = TRUE, count = 4, fill = 0.8, pattern = 'odd'),
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caps = list(
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x = list(show = TRUE),
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y = list(show = TRUE),
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z = list(show = TRUE)
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)
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) %>%
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layout(
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margin=list(t = 0, l = 0, b = 0),
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scene=list(
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camera=list(
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eye=list(
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x = 1.86,
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y = 0.61,
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z = 0.98
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)
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)
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)
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)
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# Create a shareable link to your chart
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# Set up API credentials: https://plot.ly/r/getting-started
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chart_link = api_create(p, filename="multiple-isosurface-caps")
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chart_link
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```
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```{r, echo=FALSE}
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chart_link
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```
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#### Reference
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See our [reference page](https://plot.ly/r/reference/) for more information and chart attribute options!.

‎_posts/r/3d/2019-04-16-isosurface.md

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---
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title: 3D Isosurface Plots | Plotly
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name: 3D Isosurface Plots
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permalink: r/3d-isosurface-plots/
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description: How to create 3D isosurface plots with Plotly.
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layout: base
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thumbnail: thumbnail/isosurface.jpg
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language: r
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has_thumbnail: true
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display_as: 3d_charts
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order: 20
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output:
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html_document:
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keep_md: true
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---
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### New to Plotly?
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Plotly's R library is free and open source!<br>
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[Get started](https://plot.ly/r/getting-started/) by downloading the client and [reading the primer](https://plot.ly/r/getting-started/).<br>
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You can set up Plotly to work in [online](https://plot.ly/r/getting-started/#hosting-graphs-in-your-online-plotly-account) or [offline](https://plot.ly/r/offline/) mode.<br>
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We also have a quick-reference [cheatsheet](https://images.plot.ly/plotly-documentation/images/r_cheat_sheet.pdf) (new!) to help you get started!
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### Version Check
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Version 4 of Plotly's R package is now [available](https://plot.ly/r/getting-started/#installation)!<br>
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Check out [this post](http://moderndata.plot.ly/upgrading-to-plotly-4-0-and-above/) for more information on breaking changes and new features available in this version.
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```r
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library(plotly)
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packageVersion('plotly')
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```
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```
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## [1] '4.9.0'
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```
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#### Basic Isosurface Plot
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```r
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library(plotly)
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p <- plot_ly(
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type='isosurface',
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x = c(0,0,0,0,1,1,1,1),
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y = c(1,0,1,0,1,0,1,0),
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z = c(1,1,0,0,1,1,0,0),
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value = c(1,2,3,4,5,6,7,8),
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isomin=2,
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isomax=6
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)
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# Create a shareable link to your chart
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# Set up API credentials: https://plot.ly/r/getting-started
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chart_link = api_create(p, filename="isosurface-basic")
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chart_link
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```
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<iframe src="https://plot.ly/~RPlotBot/5639.embed" width="800" height="600" id="igraph" scrolling="no" seamless="seamless" frameBorder="0"> </iframe>
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#### Isosurface with Additional Slices
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```r
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library(plotly)
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df <- read.csv('https://raw.githubusercontent.com/plotly/datasets/master/clebsch-cubic.csv')
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p <- plot_ly(
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df,
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type='isosurface',
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x = ~x,
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y = ~y,
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z = ~z,
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value = ~value,
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isomin = -100,
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isomax = 100,
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colorscale='RdBu',
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surface = list(show = TRUE, count = 1),
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slices = list(z = list(
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show = TRUE, locations = c(-0.3, 0.5)
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)),
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caps = list(
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x = list(show = FALSE),
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y = list(show = FALSE),
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z = list(show = FALSE)
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)
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) %>%
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layout(
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margin=list(t = 0, l = 0, b = 0),
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scene=list(
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camera=list(
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eye=list(
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x = 1.86,
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y = 0.61,
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z = 0.98
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)
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)
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)
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)
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# Create a shareable link to your chart
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# Set up API credentials: https://plot.ly/r/getting-started
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chart_link = api_create(p, filename="isosurface-slices")
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chart_link
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```
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<iframe src="https://plot.ly/~RPlotBot/5641.embed" width="800" height="600" id="igraph" scrolling="no" seamless="seamless" frameBorder="0"> </iframe>
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#### Multiple Isosurfaces with Caps
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```r
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library(plotly)
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df <- read.csv('https://raw.githubusercontent.com/plotly/datasets/master/clebsch-cubic.csv')
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p <- plot_ly(
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df,
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type='isosurface',
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x = ~x,
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y = ~y,
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z = ~z,
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value = ~value,
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isomin = -10,
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isomax = 10,
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surface = list(show = TRUE, count = 4, fill = 0.8, pattern = 'odd'),
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caps = list(
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x = list(show = TRUE),
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y = list(show = TRUE),
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z = list(show = TRUE)
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)
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) %>%
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layout(
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margin=list(t = 0, l = 0, b = 0),
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scene=list(
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camera=list(
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eye=list(
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x = 1.86,
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y = 0.61,
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z = 0.98
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)
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)
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)
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)
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# Create a shareable link to your chart
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# Set up API credentials: https://plot.ly/r/getting-started
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chart_link = api_create(p, filename="multiple-isosurface-caps")
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chart_link
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```
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<iframe src="https://plot.ly/~RPlotBot/5643.embed" width="800" height="600" id="igraph" scrolling="no" seamless="seamless" frameBorder="0"> </iframe>
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#### Reference
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See our [reference page](https://plot.ly/r/reference/) for more information and chart attribute options!.

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