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Commits on May 26, 2022

• docker augustus workaround, add perl modules for #722

  

  Jon Palmer

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• try debian packaged augustus

  

  Jon Palmer

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Commits on May 25, 2022

• relax python version try to get conda build

  

  Jon Palmer

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  2a9319d

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• try to pin different augustus build #724 try range

  

  Jon Palmer

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  a4db310

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• try to pin different augustus build #724 try 3.3.2

  

  Jon Palmer

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• try to pin different augustus build #724 again with linux build number _9

  

  Jon Palmer

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• try to pin different augustus build #724

  

  Jon Palmer

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• Merge branch 'master' of https://github.com/nextgenusfs/funannotate

  

  Jon Palmer

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• checkmask write to output folder #722

  

  Jon Palmer

  committed
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Commits on Apr 26, 2022

• add a isoform extraction tool from protein/transcript files

  hyphaltip

  committed
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Commits on Apr 11, 2022

• Fix parameter for python 3.6 compatibility (#710)

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  mglubber

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  47b0849

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Commits on Apr 10, 2022

• Combine runSubprocessN into a single function (#707)

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  mglubber

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  32d85a7

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• Fix EVM running with .gff3 input ending with empty line. (#709)

  liberjul

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  74f5873

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Commits on Mar 27, 2022

• fix typo

  nextgenusfs

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  d82e9eb

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• update urls to http

  nextgenusfs

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• Merge branch 'master' of https://github.com/nextgenusfs/funannotate

  

  Jon Palmer

  committed
  2145d3b

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• try to fix perl getops error

  

  Jon Palmer

  committed
  32a743c

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Commits on Mar 2, 2022

• update parameter from antismash5 to antismash6 (#692)

  azneto

  authored
  fcaa546

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Commits on Feb 23, 2022

• Merge branch 'master' of https://github.com/nextgenusfs/funannotate

  

  Jon Palmer

  committed
  47a797c

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• pasa version check; add -m,--mito-pass-thru to annotate script

  

  Jon Palmer

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Commits on Feb 15, 2022

• Add two new badges, for conda and Galaxy integration (#691)

  bgruening

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  6dbe475

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Commits on Feb 6, 2022

• Merge branch 'master' of github.com:nextgenusfs/funannotate

  hyphaltip

  committed
  0b7b254

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Commits on Jan 11, 2022

• modify cds ID parsing for PASA 2.5.1

  

  Jon Palmer

  committed
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Commits on Dec 31, 2021

• fix matplotlib tempdir for docker image

  

  Jon Palmer

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• update dockerfile base w/ pigz, libgl1 (ete3)

  

  Jon Palmer

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Commits on Dec 13, 2021

• use SeqIO.index instead of SeqIO.index_db in EVM partition #646

  

  Jon Palmer

  committed
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Commits on Nov 30, 2021

• Merge branch 'master' of github.com:nextgenusfs/funannotate

  hyphaltip

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• str not seq -- sloppy debugging jason

  hyphaltip

  committed
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• fix typo for str in L302 in p2g

  

  Jon Palmer

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• fix empty open cmd

  hyphaltip

  committed
  67d8c5c

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• move from concat by '.' to join statement for tab delimited line

  hyphaltip

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• fix memory leak or something else that prevented scaffold subslices from being written efficiently for staging exonerate runs. Tested but no difference in using SeqIO.write vs simpler direct writin…

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  hyphaltip

  committed
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• fix for abnormal contig ids #672

  

  Jon Palmer

  committed
  f02d425

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• add debug statements to p2g write to logfile to track PIDs

  

  Jon Palmer

  committed
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Commits on Nov 27, 2021

• Check for pigz and perl local::lib. (#661)

  davised

  authored
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