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saforem2saforem2
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minor update
1 parent 0c04205 commit 835355b

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6 files changed

+568
-155
lines changed

6 files changed

+568
-155
lines changed

‎worm_algorithm/bonds.py‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -57,10 +57,10 @@ def __init__(self, L, run=False, num_steps=1E7, verbose=True,
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self._x_bonds = {}
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self._y_bonds = {}
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self._config_data = self.set_config_data()
60+
self._blocked_config_data = self.block_configs(block_val)
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if write:
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self.write_config_data()
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if write_blocked:
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self._blocked_config_data = self.block_configs(block_val)
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self.write_blocked_config_data()
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def _get_raw_bonds(self):

‎worm_algorithm/count_bonds.py‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -111,7 +111,7 @@ def _count_bonds(self, data):
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np.sum([config[i] for i in bond_idxs]) for config in
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data.reshape(-1, w, w)
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])
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bc_arr = bc_arr[np.where(bc_arr != 0)]
114+
# bc_arr = bc_arr[np.where(bc_arr != 0)]
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bc2_arr = bc_arr ** 2
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Nb_avg = np.mean(bc_arr)
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Nb2_avg = np.mean(bc2_arr)

‎worm_algorithm/draw_worm_configurations.ipynb‎

Lines changed: 18 additions & 38 deletions
Original file line numberDiff line numberDiff line change
@@ -21,8 +21,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-27T21:59:25.732003Z",
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"start_time": "2018-04-27T21:59:23.681478Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -72,8 +71,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-27T21:59:26.963761Z",
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"start_time": "2018-04-27T21:59:26.794845Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -140,8 +138,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-27T21:59:43.745847Z",
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"start_time": "2018-04-27T21:59:43.226636Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -242,8 +239,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-27T21:59:47.214684Z",
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"start_time": "2018-04-27T21:59:46.359588Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -373,8 +369,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-27T21:59:50.072844Z",
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"start_time": "2018-04-27T21:59:50.018087Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -418,8 +413,7 @@
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"end_time": "2018-02-06T03:06:31.204332Z",
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"start_time": "2018-02-06T03:06:31.165298Z"
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},
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"code_folding": [],
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"collapsed": true
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"code_folding": []
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},
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"outputs": [],
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"source": [
@@ -439,8 +433,7 @@
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"ExecuteTime": {
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"end_time": "2018-02-06T03:06:36.979197Z",
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"start_time": "2018-02-06T03:06:32.080478Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -454,8 +447,7 @@
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"ExecuteTime": {
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"end_time": "2018-02-14T08:02:47.190040Z",
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"start_time": "2018-02-14T08:02:44.215332Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -469,8 +461,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-27T22:01:32.434086Z",
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"start_time": "2018-04-27T22:01:32.364818Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -490,8 +481,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-28T00:53:41.496962Z",
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"start_time": "2018-04-28T00:51:46.081423Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -505,8 +495,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-27T22:05:19.976442Z",
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"start_time": "2018-04-27T22:05:19.923499Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -533,8 +522,7 @@
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"ExecuteTime": {
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"end_time": "2018-02-06T03:06:41.536301Z",
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"start_time": "2018-02-06T03:06:39.723452Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -549,8 +537,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-28T01:03:05.371210Z",
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"start_time": "2018-04-28T01:03:05.338862Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -589,8 +576,7 @@
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"ExecuteTime": {
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"end_time": "2018-04-27T22:06:55.045587Z",
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"start_time": "2018-04-27T22:06:55.012725Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -1419,8 +1405,7 @@
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"ExecuteTime": {
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"end_time": "2018-02-06T03:12:50.497011Z",
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"start_time": "2018-02-06T03:12:50.464917Z"
1422-
},
1423-
"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -3064,9 +3049,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
3052+
"metadata": {},
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"outputs": [],
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"source": [
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"fig_b1, ax_b1 = plot_worm_config_blocked(config=config_blocked1, \n",
@@ -7381,8 +7364,7 @@
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"ExecuteTime": {
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"end_time": "2018-02-14T08:04:20.249663Z",
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"start_time": "2018-02-14T08:04:20.208853Z"
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},
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"collapsed": true
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}
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},
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"outputs": [],
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"source": [
@@ -8222,9 +8204,7 @@
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{
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"cell_type": "code",
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"execution_count": null,
8225-
"metadata": {
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"collapsed": true
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},
8207+
"metadata": {},
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"outputs": [],
82298209
"source": []
82308210
}

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