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gvcf2vcf not filling in REF allele correctly #243

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#244
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gvcf2vcf not filling in REF allele correctly#243
#244
@mcshane

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@mcshane
mcshane
opened on Apr 22, 2015

When fixing #242 noticed that gvcf2vcf is just copying the REF allele from the beginning of the block. Command needs to take a reference fasta as input to fill in REF correctly.

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