implemented multi-threading for h5ad file reads, substantial speed up (rivals zarr + zarrs) #2769
Annotations
2 errors and 19 warnings
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test (hatch-test.pre, 3.14, --strict-warnings, not zarr_io)
Process completed with exit code 1.
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check
Process completed with exit code 1.
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test (hatch-test.array_api, 3.14, zarr_io)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.array_api, 3.14, not zarr_io)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.array_api, 3.14, not zarr_io)
Failed to save: Unable to reserve cache with key setup-uv-2-x86_64-unknown-linux-gnu-ubuntu-24.04-3.14-pruned-88e8a29ded54203df15a9a6aea93568578d6b71c6d342e878282443ef1f646a3, another job may be creating this cache.
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test (hatch-test.min, 3.12, dask_distributed)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.stable, 3.14, --strict-warnings, dask_distributed)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.stable, 3.14, --strict-warnings, dask_distributed)
Failed to save: Unable to reserve cache with key setup-uv-2-x86_64-unknown-linux-gnu-ubuntu-24.04-3.14-pruned-88e8a29ded54203df15a9a6aea93568578d6b71c6d342e878282443ef1f646a3, another job may be creating this cache.
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test (hatch-test.pre, 3.14, --strict-warnings, dask_distributed)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.pre, 3.14, --strict-warnings, dask_distributed)
Failed to save: Unable to reserve cache with key setup-uv-2-x86_64-unknown-linux-gnu-ubuntu-24.04-3.14-pruned-88e8a29ded54203df15a9a6aea93568578d6b71c6d342e878282443ef1f646a3, another job may be creating this cache.
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test (hatch-test.pre, 3.14, --strict-warnings, not zarr_io)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.stable, 3.14, --strict-warnings, not zarr_io)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.stable, 3.14, --strict-warnings, not zarr_io)
Failed to save: Unable to reserve cache with key setup-uv-2-x86_64-unknown-linux-gnu-ubuntu-24.04-3.14-pruned-88e8a29ded54203df15a9a6aea93568578d6b71c6d342e878282443ef1f646a3, another job may be creating this cache.
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test (hatch-test.stable, 3.14, --strict-warnings, zarr_io)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.stable, 3.14, --strict-warnings, zarr_io)
Failed to save: Unable to reserve cache with key setup-uv-2-x86_64-unknown-linux-gnu-ubuntu-24.04-3.14-pruned-88e8a29ded54203df15a9a6aea93568578d6b71c6d342e878282443ef1f646a3, another job may be creating this cache.
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test (hatch-test.pre, 3.14, --strict-warnings, zarr_io)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.pre, 3.14, --strict-warnings, zarr_io)
Failed to save: Unable to reserve cache with key setup-uv-2-x86_64-unknown-linux-gnu-ubuntu-24.04-3.14-pruned-88e8a29ded54203df15a9a6aea93568578d6b71c6d342e878282443ef1f646a3, another job may be creating this cache.
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test (hatch-test.min, 3.12, not zarr_io)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.min, 3.12, not zarr_io)
Failed to save: Unable to reserve cache with key setup-uv-2-x86_64-unknown-linux-gnu-ubuntu-24.04-3.12-pruned-88e8a29ded54203df15a9a6aea93568578d6b71c6d342e878282443ef1f646a3, another job may be creating this cache.
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test (hatch-test.min, 3.12, zarr_io)
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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test (hatch-test.min, 3.12, zarr_io)
Failed to save: Unable to reserve cache with key setup-uv-2-x86_64-unknown-linux-gnu-ubuntu-24.04-3.12-pruned-88e8a29ded54203df15a9a6aea93568578d6b71c6d342e878282443ef1f646a3, another job may be creating this cache.
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