Mondo Disease Ontology

Schema and generated objects for biolink data model and upper ontology

SQL and SQLite builds of OWL ontologies

Graph-based modeling environment for biology, including prototype editor and services

Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species

Claude skills for a variety of curation and knowledge-based tasks. We currently have 3 skills included, but intend to grow this.

Common value sets (enums) for science, biomedicine, computing, and other areas

Best practices for BBOP group repos, intended for coding agents and humans

Copier template for adding AI integrations to a GH repo

A simple Python wrapper for multiple deep research tools including OpenAI Deep Research, FutureHouse Falcon, and Perplexity AI.

Demonstration of AI review of existing functional annotations

A Python CLI wrapper for running AI coder agents (claude code, gemini-cli, etc)

Python tools for programmatically manipulating GO-CAM (Gene Ontology Causal Activity Models) via the Noctua/Minerva/Barista API stack, with additional support for querying GO annotations and bioentities via GOlr

A prototype AI-powered research assistant for preparing EcoSIM analyses, generating netCDF files from multiple sources

Rendering of FAO soil database