Matrix dissimilarity from the differences of Moments and sparsity

Method to find contrastive dimensions between experimental conditions

Divisive Intelligent K-Means algorithm (DiviK) for joint feature selection and clustering of heavily multidimensional data.

Phenotyping data analysis

Code for paper "Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration"

🧬Custom Bulk RNA-seq workflow for QC, DESeq2 differential expression, and visualization in R 🧬 (RNA-seq, bioinformatics, bulk-rnaseq, visualization, DESeq2, edgeR)

We implemented and generalized single-cell functions and targeted analytical code for single-cell omics data analysis.

Interstitial lung disease biomarker discovery using DIABLO. Integrates DNA methylation, transcriptome, and proteome. 30k features from 23 cases and 83 controls. Supervised learning model maximizing cross block covariance, adj R^2=0.73, 13 candidate biomarkers, with code and plots.

Personal portfolio enumerating my main omic analyses projects

🧬 Analyze bulk RNA-seq time-course data using the ZRN01 dataset, streamlining visualization and interpretation with powerful tools and efficient workflows.