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title: Work
permalink: work/
profile: true
---

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<h3><strong>Fun Ideas and Projects</strong></h3>
<ul>

	<li><a href="https://vsoch.github.io/salted-caramel/" target="_blank">Salted Caramel</a>: never too old for a bedtime story! :)</li>
	<li><a href="http://vsoch.github.io/2016/pokemon-ascii/" target="_blank">Pokemon Ascii</a>: avatar generator [<a href="https://github.com/vsoch/pokemon-ascii" target="_blank">Github</a>]</li>
	<li><a href="http://vsoch.github.io/2016/service-worker-resource-saver/" target="_blank">Service Worker Resource Saved</a> [<a href="https://vsoch.github.io/resource-saver/" target="_blank">demo</a>]</li>
	<li><a href="http://vsoch.github.io/2016/cogat-neo4j/" target="_blank">Cognitive Atlas</a>: Version 2.0 with Django/Neo4j [<a href="github.com/vsoch/cogat-docker" target="_blank">Github</a>]</li>
	<li><a href="http://vsoch.github.io/nidmviewer" target="_blank">NIDM Viewer</a>: view Neuroimaging Data Model results [<a href="http://neurovault.org/collections/877/fsl_course_av.nidm" target="_blank">NeuroVault</a>]</li>
	<li><a href="http://vsoch.github.io/nifti-drop" target="_blank">Nifti-Drop</a>: drop and go nifti in browser</li>
	<li><a href="http://vsoch.github.io/brain-matrix/ca.html" target="_blank">Cognitive Atlas Matrix</a>: red or blue brain?</li>
	<li><a href="http://vsoch.github.io/drain-log" target="_blank">DrainLog</a>: an interactive log for a JP Drain [medical]</li>
	<li><a href="http://vsoch.github.io/mybrain" target="_blank">MyBrain</a>: My fun visualization project, my first experience with Poldracklab</li>
	<li><a href="http://www.vbmis.com/bmi/nsynth2ca/" target="_blank">Nsynth2CA</a>: NeuroSynth to Cognitive Atlas mapping, connected me with my lab! &lt;3</li>
	<li><a href="http://vbmis.com/bmi/project/traits" target="_blank">Traits</a>: Mapping of behavioral traits to associated families [research in progress]</li>
	<li><a href="http://vsoch.github.io/brain-canvas" target="_blank">Brain-canvas</a>: 150K values in via canvas</li>
	<li><a href="http://vbmis.com/bmi/project/cogat/neurovault" target="_blank">NeuroVault in Cognitive Atlas</a></li>
	<li><a href="http://vsoch.github.io/font-brain/" target="_blank">Font-Brain</a>: web font for neuroscience researchers</li>
	<li><a href="http://www.vbmis.com/bmi/project/potpourri/" target="_blank">Potpourri</a>: Mixing up ontologies</li>
	<li><a href="http://vsoch.github.io/nipy" target="_blank">Nipy</a>: designing a new template for nipy.github.io</li>
	<li><a href="http://vbmis.com/bmi/project/banner/" target="_blank">Banner</a>: Custom banner creation (created for a virtual machine for a publication)</li>
	<li><a href="http://vbmis.com/bmi/project/grid/" target="_blank">Grid</a>: a "brain grid" prototype to read in a nifti file and render all 200K+ voxels (canvas)</li>
	<li><a href="http://vbmis.com/bmi/n2g/" target="_blank">Neuro2Gene</a>: a project with work not suitable for publication, but a nice web interface</li>
	<li><a href="http://www.vbmis.com/bmi/project/mac/" target="_blank">theMAC</a>: Early work for a functional connectivity explorer</li>
	<li><a href="http://vbmis.com/bmi/project/GO/">GO</a>: Genetic annotation of behavior (mapping of brain to behaviors via genes)</li>
	<li><a href="http://vbmis.com/bmi/project/brainsilouette/" target="_blank">Silhouette</a>: An idea for comparing regional brain maps</li>
</ul>
&nbsp;
<h3><strong>Research and Academic</strong></h3>
<ul>
	<li><a href="https://singularityware.github.io" target="_blank">Singularity</a>: developing tools and applications for container based analyses <a href="https://www.github.com/singularityware" target="_blank">[software]</a></li>
	<li><a href="https://expfactory.github.io" target="_blank">The Experiment Factory</a>: standardizing deployment of behavioral experiments <a href="http://www.expfactory.org" target="_blank">[expfactory.org]</a></li>
	<li><a href="http://www.neuropowertools.org/" target="_blank">Neuropower Tools</a>: for calculating power / sample size.</li>
        <li><a href="https://www.github.com/word-fish" target="_blank">Wordfish</a>: tools for finding relationships in corpus from terminologies <a href="http://vsoch.github.io/2016/2016-wordfish/" target="_blank">[details]</a></li>
	<li><a href="https://github.com/vsoch/image-comparison-thresholding" target="_blank">Confusion</a>: optimal classification of fMRI contrast images [<a href="http://journal.frontiersin.org/article/10.3389/fnins.2015.00418/full" target="_blank">cite</a>]</li>
	<li><a href="http://www.vbmis.com/bmi/authorSynth/" target="_blank">AuthorSynth</a>: a neuroscience author collaboration network [<a href="http://journal.frontiersin.org/article/10.3389/fninf.2015.00006/abstract" target="_blank">cite</a>].</li>
	<li><a href="http://vbmis.com/bmi/noisecloud" target="_blank">Noisecloud</a>: spatial and temporal features to classify artifact in fMRI [<a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0095493" target="_blank">cite</a>].</li>
	<li><a href="http://npmjs.com/package/brain-browser" target="_blank">Brain-Browser:</a> view brain maps in local web browser</li>
        <li><a href="nidm-api.readthedocs.org" target="_blank">NIDM-API</a>: API for the Neuroimaging Data Model <a href="https://github.com/Brainhack-Proceedings-2015/Sochat-AMX-NIDM/blob/master/neuroimaging-data-model.pdf" target="_blank">[paper]</a></li>
        <li><a href="http://www.vbmis.com/learn" target="_blank">Virtual Biomedical Informatics Learning</a>: writing and learning about methods.</li>
        <li><a href="https://github.com/vsoch/visci" target="_blank">Visualization for Continuous Integration</a>: and other places too [<a href="https://github.com/vsoch/visualization-ci" target="_blank">example</a>]</li>
	<li><a href="http://www.vbmis.com/bmi/project/annotate" target="_blank">NeuroVault annotation</a>: using <a href="http://hypothes.is" target="_blank">hypothes.is</a>, <a href="http://www.cognitiveatlas.org" target="_blank">Cognitive Atlas</a>, and <a href="http://www.neurovault.org" target="_blank">NeuroVault</a> APIs</li>
	<li><a href="http://www.vbmis.com/bmi/project/niindex" target="_blank">Niindex</a>: Directory browsing for nifti images [<a href="http://www.github.com/vsoch/niindex" target="_blank">github</a>]</li>
	<li><a href="http://www.nipy.org" target="_blank">Nipy</a>: nipy org website with continuous integration, gh-pages hosting</li>
	<li><a href="http://haririlab.com" target="_blank">Long</a>: Laboratory of NeuroGenetics (created original design, 2009)</li>
	<li><a href="http://vsoch.com/blog/media/Bogdan/" target="_blank">BRAIN Lab</a>: designed 2011.</li>
	<li><a href="http://vbmis.com/bmi/course/">Courses</a>: the classes I took for my PhD</li>
</ul>
&nbsp;
<h3><strong>Early Graduate School</strong></h3>
<ul>
	<li>ICA[<a href="http://vbmis.com/bmi/project/NYU10/">10</a>][<a href="http://vbmis.com/bmi/project/NYUALL">ALL</a>]: First work at Stanford using the NYU datasets with Rubin Lab</li>
	<li><a href="http://www.vbmis.com/bmi/project/pyCorr/" target="_blank">Template Matching</a>: for functional brain images</li>
	<li><a href="http://vbmis.com/bmi/project/conndb/" target="_blank">ConnDB</a>: I have no idea. I think it involved Protege, & I was terrified.</li>
	<li><a href="http://www.vbmis.com/bmi/project/ndar/" target="_blank">NDAR</a>: Summarizing data in NDAR</li>
        <li><a href="http://www.vsoch.com/wiki/doku.php" target="_blank">Pre-graduate school</a></li>
</ul>
&nbsp;
<h3><strong>Pybraincompare Python Package [<a href="http://www.github.com/vsoch/pybraincompare" target="_blank">github</a>]</strong></h3>
<ul>
	<li><a href="http://vbmis.com/bmi/share/neurovault/connectogram.html" target="_blank">Connectogram</a>: to show functional brain network connectivity</li>
	<li><a href="http://vbmis.com/bmi/share/neurovault/histogram.html" target="_blank">Histogram</a>: Animated histogram</li>
	<li><a href="http://vbmis.com/bmi/share/neurovault/scatter_atlas.html" target="_blank">Scatterplot Compare</a>: interactive scatterplot to compare two images with a brain atlas</li>
	<li><a href="http://vbmis.com/bmi/share/neurovault/reverse_inference.html" target="_blank">Ontology</a>: Simple tree to show some kind of ontology or graph [d3]</li>
	<li><a href="http://www.vbmis.com/bmi/project/qa/index.html" target="_blank">Quality Analysis (QA)</a>: interactive report for fMRI</li>
</ul>
&nbsp;
<h3><strong>Just Fun</strong></h3>
<ul>
	<li><a href="https://github.com/vsoch/brainart" target="_blank">make web images out of actual brain data</a></li>
	<li><a href="http://vsoch.github.io/chris-computer" target="_blank">Chris Computer: Should have bought a PC...</a></li>
	<li><a href="http://www.vbmis.com/bmi/project/particles/" target="_blank">Particles</a></li>
	<li><a href="http://vbmis.com/bmi/project/soylent" target="_blank">Soylent Green</a></li>
	<li><a href="http://www.vbmis.com/bmi/project/ketchup/" target="_blank">Ketchup</a></li>
	<li><a href="http://www.vbmis.com/project/mosquito" target="_blank">Mosquito</a></li>
	<li><a href="http://www.vbmis.com/bmi/project/snowstorm/" target="_blank">Snowstorm</a></li>
</ul>
<h3></h3>
<h3><strong>Other</strong></h3>
<ul>
	<li><a href="http://natacha.net/NKGBoston2012/index.html" target="_blank">NKG Boston</a>: art gallery, closed.</li>
	<li><a href="https://github.com/vsoch/gbmatlas.stanford.edu" target="_blank">GBMAtlas</a>: for glioblastomia multiforme, explore genes and brain anatomy</li>
</ul>


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