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Software Index

This page catalogs software projects that may be of interest to the ImageJ community.

Alida
Bio7
BioDIP
BioImageXD
CellProfiler
Endrov
Fiji
FunImageJ
Icy
ImageJ.JS
ImageJ
ImageJ2
ImageJFX
ImageJX
ImagePy
ImageSXM
ImJoy
ITK
JEX
KNIME Analytics Platform
MBF Plugin Collection
Micro-Manager
napari
NIH Image
OMERO
OpenCV
OpenSPIM
QuPath
Virtual Cell
VisBio

Forum
X/Twitter
GitHub

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ImageJ Docs

Download
Learn
- ImageJ Basics
  - Tutorials
  - User Guides
  - Keyboard Shortcuts
  - Tips and Tricks
  - Troubleshooting
  - Frequently Asked Questions
  - Supported Platforms
    
    Windows
    
    MacOS
    
    Linux
    
    Raspberry Pi
    
    Android
  - File Formats
    
    Bio-Formats
    
    Video formats
    
    QuickTime
    
    TIFF
    
    PDF
    
    DICOM
    
    Zeiss LSM
    
    Olympus VSI
    
    Opera Flex
    
    FIB-SEM
- Scientific Imaging
Extend
Contribute
- Citing
- Contributors
- Organizations
- Governance
- Funding
- Contributing to Fiji
- Licensing
  - Open Source
    
    Apache
    
    BSD
    
    EPL
    
    GPL
    
    LGPL
    
    MIT
    
    Public domain
    
    BIG
  - Proprietary
- Editing the Wiki
  - Advanced Editing
  - Buttons
  - Citations
  - Source Code
  - Debugging
  - Headers
  - Icons
  - Images
  - Keyboard Shortcuts
  - Linking
  - Math Expressions
  - Menu Paths
  - Navigation
  - Notices
  - People
  - Pitfalls
  - Quizzes
  - Statbox
  - Symbols
  - Tables
  - Tooltips
  - Videos
  - Whitespace
Discuss
Explore
- News
- Events
- Libraries
- Software
  - NIH Image
  - ImageJ
  - ImageJ2
  - Fiji
  - More...