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0.1.5 Sep 12, 2025
0.1.4 Sep 12, 2025
0.1.3 May 19, 2025

#434 in Biology

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https://webdocs.cs.ualberta.ca/~kondrak/ Copyright 2002 by Grzegorz Kondrak.

ALINE is an algorithm for aligning phonetic sequences, described in [1]. This module is a port of Kondrak's (2002) ALINE. It provides functions for phonetic sequence alignment and similarity analysis. These are useful in historical linguistics, sociolinguistics and synchronic phonology.

ALINE has parameters that can be tuned for desired output. These parameters are:

  • C_skip, C_sub, C_exp, C_vwl
  • Salience weights
  • Segmental features

In this implementation, some parameters have been changed from their default values as described in [1], in order to replicate published results. All changes are noted in comments.

Get optimal alignment of two phonetic sequences

use kondrak_aline::align;

let alignment = align("θin", "tenwis", 0.0);

assert_eq!(
    alignment,
    vec![
        vec![
            ("θ", "t"),
            ("i", "e"),
            ("n", "n")
        ].iter()
        .map(|(a, b)| (a.to_string(), b.to_string()))
        .collect::<Vec<(String, String)>>()
    ]
);

References

[1] G. Kondrak. Algorithms for Language Reconstruction. PhD dissertation, University of Toronto.

Dependencies

~0.7–1.7MB
~32K SLoC