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› Keywords #bioinformatics #rsomics #fastq #bam #build-system #cargo-workspace

#fasta-sequence

  1. multiseqex

    Multi-sequence extractor from FASTA using FAI indexing, with parallelism and flexible region input formats

    v0.2.1 #fasta-sequence #bioinformatics-sequence #fasta #bioinformatics #parallel #faidx

  2. nail

    alignment inference tool

    v0.5.0 #sequence-alignment #inference #fasta #search-query #fasta-sequence #biological-sequence

  3. seqtkrs

    reimplementation of seqtk, a fast and lightweight tool for processing biological sequences in FASTA/FASTQ format

    v0.1.1 #genomics #fasta-sequence #bioinformatics #bioinformatics-sequence #fasta #fastq

  4. selexqc

    High-performance parallel RNA Capture-SELEX library quality control

    v0.1.0 #bioinformatics #fasta-sequence #bioinformatics-sequence #fasta #fastq #selex

  5. jseqio

    Reading and writing biological sequences in FASTA or FASTQ format

    v0.1.7 #fasta-sequence #fastq #format #iterator #stream #compression #biological

  6. rsomics-motif-scan

    Scan FASTA sequences for IUPAC DNA motif occurrences — BED output of match positions

    v0.1.0 #fasta #motif #bed #dna #scan #rsomics #genomics #iupac #dna-sequence #fasta-sequence

  7. rsomics-fasta-filter

    Filter FASTA sequences by length — seqkit seq -m equivalent

    v0.1.0 #fasta #seqkit #rsomics #fasta-sequence #length #bioinformatics #cargo-workspace #bam #upstream #build-system

  8. rsomics-fasta-rename

    Rename FASTA sequence IDs with sequential numbering

    v0.1.0 #fasta #rename #rsomics #fasta-sequence #sequential #bioinformatics #cargo-workspace #bam #upstream #build-system

  9. rsomics-fasta-count

    Count sequences in FASTA files (gz-transparent)

    v0.1.0 #fasta #fasta-sequence #rsomics #bioinformatics #cargo-workspace #bam #upstream #build-system #multi-core #conventions

  10. fakit

    program for fasta file manipulation

    v0.4.0 1.2K #fasta #fasta-sequence #bio #fa

  11. rsomics-fasta-upper

    Uppercase FASTA sequences

    v0.1.0 #fasta #upper-case #rsomics #fasta-sequence #bioinformatics #cargo-workspace #bam #upstream #build-system #multi-core

  12. rsomics-fasta-sample

    Random subsample of FASTA sequences — seqkit sample for FASTA

    v0.1.0 #fasta #sample #seqkit #rsomics #fasta-sequence #bioinformatics #cargo-workspace #bam #upstream #build-system

  13. refget-store

    Sequence storage backends for GA4GH refget: in-memory, FASTA, and memory-mapped

    v0.1.0 #genomics #fasta #sequence-collection #fasta-sequence #bioinformatics #hash #refget #ga4gh #memory-map #indexed-fasta

  14. codonrs

    Calculate relative synonymous codon usage for coding DNA sequences in a fasta file

    v0.2.8 #codon #fasta #fasta-sequence #dna-sequence #calculate #dna-sequence-analysis #file-analysis

  15. spillover-bio

    Genomics-focused disk-spilling sort pipeline for FASTQ/FASTA sequence records

    v0.1.3 #record #sorting #fastq #spillover #fasta #fasta-sequence #dedup #dryice #acceleration #sorter

  16. seqtk-rs

    sequence processing tool written in Rust for manipulating FASTA/FASTQ files. Pure rust version of seqtk.

    v0.2.0 #bio #fasta-sequence #fasta #fastq #ngs

  17. fasta-cleaner

    Transform fasta files by upper-casing all sequence characters and removing non-ACGT sequence characters

    v1.0.1 #fasta #fasta-sequence #character #removing #input-file #cleaner #upper-case

  18. fasta-stats

    descriptive statistics on FASTA (biological sequence) data

    v0.3.1 #fasta #fasta-sequence #statistics #descriptive #biological #biological-sequence

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  19. syncmers

    finding syncmers

    v0.1.5 #bioinformatics #bioinformatics-sequence #fasta #fastq #fasta-sequence

  20. Fastatsplit

    A modest program written in rust made to store wanted and unwanted FASTA sequences to different FASTA files. Born from the necessity to have a FASTA filtering tool faster than seqkit

    v0.1.1 #fastatsplit #fasta-sequence #filtering #unwanted #store #modest #born #necessity

  21. vcfverifier

    Verifies that a given VCF matches a given FASTA by comparing the REF column in the VCF to the underlying FASTA sequences

    v0.1.1 #fasta-vcf #match #column #case-insensitive #fasta-sequence #genome #gzip #plain-text

  22. seqsample

    Randomly sample sequences from a FASTA file

    v0.2.0 #fasta #fasta-sequence #fastq

  23. count_constant_sites

    Compute the count of cases in constant sites in a (FASTA) multiple sequence alignment

    v0.1.1 #fasta #sequence-alignment #site #constant #fasta-sequence