fix: revert adding PersistManager::findBy()#996
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fixes #990 by actually reverting #983 - this solution implied too much problems (see #992 and #994), and I don't know how to fix #990 without too much complexity.
I fixed the problem it initially tried to resolve by forcing the refresh of the entities returned by the repository decorator which are already tracked. This increases the number of SQL requests, but it simplifies a lot the code (and we actually do not perform more sql queries than we used to with proxies)
The good side of this is that few more tests cases were added to the testsuite 😊