CENTRIFUGATION
CENTRIFUGATION
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Principle of Centrifugation
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TYPES OF CENTRIFUGE
LOW-SPEED CENTRIFUGE
Ts1) Most laboratories have a standard low-speed centrifuge used for
routine sedimentation of heavy particles
2) The low-speed centrifuge has a maximum speed of 4000-5000rpm
3) These instruments usually operate at room temperatures with no means
of temperature control.
4) Two types of rotors are used in it,
Fixed angle
Swinging bucket.
5) It is used for sedimentation of red blood cells until the particles are
tightly packed into a pellet and supernatant is separated by decantation.
HIGH-SPEED CENTRIFUGES
1. High-speed centrifuges are used in more sophisticated biochemical
applications, higher speeds and temperature control of the rotor chamber
are essential.
2. The high-speed centrifuge has a maximum speed of 15,000 – 20,000
RPM
3. The operator of this instrument can carefully control speed and
temperature which is required for sensitive biological samples.
4. Three types of rotors are available for high-speed centrifugation-
Fixed angle
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Swinging bucket
Vertical rotors
ULTRACENTRIFUGES
1. It is the most sophisticated instrument.
2. Ultracentrifuge has a maximum speed of 65,000 RPM (100,000’s x g).
3. Intense heat is generated due to high speed thus the spinning chambers
must be refrigerated and kept at a high vacuum.
4. It is used for both preparative work and analytical work.
TYPES OF CENTRIFUGATION
1. Differential Pelleting (differential centrifugation)
It is the most common type of centrifugation employed.
Tissue such as the liver is homogenized at 32 degrees in a sucrose
solution that contains buffer.
The homogenate is then placed in a centrifuge and spun at constant
centrifugal force at a constant temperature.
After some time a sediment forms at the bottom of a centrifuge called
pellet and an overlying solution called supernatant.
The overlying solution is then placed in another centrifuge tube which is
then rotated at higher speeds in progressing steps.
2. Density Gradient Centrifugation
This type of centrifugation is mainly used to purify viruses, ribosomes,
membranes, etc.
A sucrose density gradient is created by gently overlaying lower
concentrations of sucrose on higher concentrations in centrifuge tubes
The particles of interest are placed on top of the gradient and centrifuge
in ultracentrifuges.
The particles travel through the gradient until they reach a point at which
their density matches the density of surrounding sucrose.
The fraction is removed and analyzed.
3. Rate-Zonal Density-Gradient Centrifugation
Zonal centrifugation is also known as band or gradient centrifugation
It relies on the concept of sedimentation coefficient (i.e. movement of
sediment through the liquid medium)
In this technique, a density gradient is created in a test tube with sucrose
and high density at the bottom.
The sample of protein is placed on the top of the gradient and then
centrifuged.
With centrifugation, faster-sedimenting particles in sample move ahead
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of slower ones i.e. sample separated as zones in the gradient.
The protein sediment according to their sedimentation coefficient and the
fractions are collected by creating a hole at the bottom of the tube.
4. Isopynic Centrifugation
The sample is loaded into the tube with the gradient-forming solution (on
top of or below pre-formed gradient, or mixed in with self-forming
gradient)
The solution of the biological sample and cesium salt is uniformly
distributed in a centrifuge tube and rotated in an ultracentrifuge.
Under the influence of centrifugal force, the cesium salts redistribute to
form a density gradient from top to bottom.
Particles move to point where their buoyant density equals that part of
gradient and form bands. This is to say the sample molecules move to
the region where their density equals the density of gradient.
It is a “true” equilibrium procedure since depends on bouyant densities,
not velocities
Eg: CsCl, NaI gradients for macromolecules and nucleotides – “self-
forming” gradients under centrifugal force.
APPLICATIONS OF CENTRIFUGATION
Centrifugation is a technique that uses centrifugal force to separate
components of a mixture based on their density, size, and shape. Here are
some key applications:
1. Biological Research:
o Cell Separation: Isolating different cell types from blood or
tissue samples.
o Protein Purification: Separating proteins based on size or
density, often used in biochemical research.
2. Clinical Diagnostics:
o Blood Component Separation: Isolating plasma or serum from
blood samples for testing.
o Urine Analysis: Concentrating and separating components for
diagnostic purposes.
3. Food Industry:
o Cream Separation: Separating cream from milk in dairy
processing.
o Juice Clarification: Removing pulp and sediment from fruit
juices.
4. Pharmaceuticals:
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o Drug Formulation: Purifying active ingredients and removing
impurities.
o Vaccine Production: Concentrating viral particles or antigens.
5. Environmental Science:
o Water Treatment: Removing suspended solids and
contaminants from water samples.
o Soil Analysis: Separating soil particles for study of composition
and contamination.
6. Industrial Applications:
o Material Separation: In manufacturing processes, separating
materials based on density (e.g., in recycling).
o Chemical Reactions: Separating products from reaction
mixtures.
7. Nanotechnology:
o Nanoparticle Separation: Isolating nanoparticles for research
and application in various fields.
8. Genetics:
o DNA/RNA Purification: Isolating nucleic acids from cells or
tissues for genetic analysis.
3. Isopycnic Centrifugation
Description: A specialized form of density gradient centrifugation
where particles reach an equilibrium position at their buoyant density.
Process:
o Similar to density gradient centrifugation, but the focus is on
maintaining the density of the gradient throughout the
centrifugation.
Applications: Used for separating nucleic acids or specific protein
complexes.
4. Ultracentrifugation
Description: Involves spinning samples at extremely high speeds (up
to 100,000 x g or more).
Process:
o This method can effectively separate very small particles like
viruses or ribosomes.
Applications: Used in molecular biology for studying macromolecules
and subcellular structures.
5. Filtration and Size Exclusion
Description: Involves passing the homogenate through filters or gels
that separate components based on size.
Process:
o Larger components are retained while smaller ones pass
through.
Applications: Useful for separating whole cells from cell debris or for
isolating specific sizes of proteins.
6. Magnetic Bead Separation
Description: Uses magnetic beads coated with antibodies to isolate
specific cell types or organelles.
Process:
o Beads bind to target components, and a magnet is applied to
separate the bound components from the rest.
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Applications: Frequently used in immunoprecipitation and cell sorting.
7. Gradient Centrifugation with Ultrafiltration
Description: Combines gradient centrifugation with ultrafiltration
techniques.
Process:
o After initial separation, ultrafiltration can refine the isolation of
specific organelles.
Applications: Enhances purity and concentration of isolated
components.
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targeting specific surface proteins of exosomes or
microvesicles.
o Application: Allows for targeted isolation of specific subsets of
extracellular organelles based on their protein markers.
LESSON (TWO) 2b: Overview of Instrumentation in Medical Biochemistry
Instrumentation in medical biochemistry encompasses a variety of
tools and techniques used for analyzing biological samples, diagnosing
diseases, and monitoring health.
These instruments collectively facilitate the various analytical,
preparatory, and safety procedures essential in medical biochemistry,
ensuring high-quality research and accurate diagnostics.
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quality control.
5. Enzyme Immunoassays (EIAs) and ELISA Kits
Function: Utilize antibodies to detect and quantify specific antigens
or antibodies in a sample.
Applications: Commonly used for diagnosing infectious diseases,
measuring hormone levels, and screening for allergens.
6. Clinical Chemistry Analyzers
Function: Automated systems that perform a wide range of
biochemical tests on blood and other body fluids.
Applications: Used for routine tests like glucose, cholesterol, liver
function tests, and electrolyte panels.
7. Nuclear Magnetic Resonance (NMR) Spectroscopy
Function: Analyzes molecular structure and dynamics based on the
magnetic properties of atomic nuclei.
Applications: Used in metabolomics and structural biology to study
metabolites and macromolecules.
18. Balances
Purpose: Accurately weighs samples and reagents.
Application: Critical for preparing precise concentrations in
experiments.
19. Dry Block Heater
Purpose: Provides uniform heat without water.
Application: Used for incubating samples at specific temperatures.
20. Colorimeter
Purpose: Measures the absorbance or transmittance of light in a
sample.
Application: Useful for quantitative analysis of colored solutions.
21. Dispensers
Purpose: Dispenses precise volumes of liquids.
Application: Facilitates the quick and accurate addition of reagents.
22. Flame Photometer
Purpose: Analyzes the concentration of certain metal ions by
measuring emitted light from a flame.
Application: Commonly used for detecting sodium, potassium, and
lithium.
23. Fume Cupboard
Purpose: Provides a ventilated workspace to safely handle hazardous
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chemicals.
Application: Essential for protecting users from toxic fumes and
vapors.
24. Gas Analyser
Purpose: Measures concentrations of gases in a sample.
Application: Used for respiratory gas analysis and environmental
monitoring.
25. Gas Detector
Purpose: Detects the presence of harmful gases.
Application: Ensures safety in the laboratory by monitoring for leaks.
26. Petri Dish
Purpose: Cultivates microorganisms and cells.
Application: Used for microbiological assays and cell culture
experiments.
27. Measuring Cylinder
Purpose: Measures liquid volumes accurately.
Application: Useful for preparing solutions in precise quantities.
28. Photometer
Purpose: Measures light intensity or concentration of light-absorbing
substances.
Application: Employed in various biochemical assays for
quantification.
29. Reagent Bottle
Purpose: Stores chemicals and reagents safely.
Application: Ensures proper labeling and storage conditions for
laboratory use.
30. Homogenizer
Purpose: Mixes and breaks down samples to create uniform
suspensions.
Application: Used for preparing tissue samples for analysis.
31. Penetrometer
Purpose: Measures the consistency of semi-solid substances.
Application: Commonly used in quality control of pharmaceutical
formulations.
32. Vortex Mixer
Purpose: Mixes small volumes of liquid samples rapidly.
Application: Used to ensure uniformity in samples and reagents.
Quality Control
1. Training
o Ensure that all personnel involved in specimen collection are
adequately trained in techniques and protocols.
2. Documentation
o Maintain accurate records of all specimens collected, including
any issues encountered during the process.
LESSON (THREE) 3b: Reference Ranges
Reference ranges, also known as normal ranges, are important
benchmarks used in laboratory medicine to interpret test results.
They represent the values typically found in a healthy population and
serve as a guide for assessing individual patient results.
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Here’s an overview:
1. Definition
Reference ranges indicate the range of values expected for a healthy
individual for a specific test.
These ranges are determined through statistical analysis of samples
from a healthy population.
2. Establishment of Reference Ranges
Population Selection: Reference ranges are established using a
representative sample of a healthy population, considering age, sex,
ethnicity, and other factors.
Statistical Methods: Typically, the range is defined as the mean ± 2
standard deviations (SD), encompassing about 95% of the healthy
population.
Laboratory Variability: Reference ranges can vary between
laboratories due to differences in equipment, reagents, and
methodologies.
3. Factors Influencing Reference Ranges
Demographics: Age, gender, race, and geographic location can all
affect normal values.
Physiological Conditions: Factors like pregnancy, diet, and
medications can alter test results.
Circadian Rhythms: Some values fluctuate throughout the day (e.g.,
cortisol levels).
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o HDL (good cholesterol): >40 mg/dL for men, >50 mg/dL for
women
Liver Function Tests:
o Alanine Aminotransferase (ALT): 7-56 units/L
o Aspartate Aminotransferase (AST): 10-40 units/L
5. Interpretation of Test Results
Above Normal Range: May indicate a potential health issue (e.g.,
diabetes, liver disease).
Below Normal Range: Can also signify problems (e.g., anemia,
malnutrition).
Contextual Interpretation: Always consider results in conjunction
with clinical symptoms and medical history.
6. Limitations of Reference Ranges
Not Absolute: Individual results may fall outside the reference range
and still be clinically normal.
Dynamic Nature: Health status can change, affecting the relevance of
the reference range over time.
7. Clinical Use
Reference ranges are essential for:
Diagnosing conditions
Monitoring disease progression
Evaluating treatment efficacy
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Key Components:
1. Standard Operating Procedures (SOPs):
o Development and implementation of written procedures for all
laboratory processes.
o Ensures consistency and compliance with protocols.
2. Training and Competency:
o Regular training for laboratory personnel to ensure they are
knowledgeable about procedures and equipment.
o Competency assessments to confirm staff can perform tests
accurately.
3. Documentation:
o Maintaining accurate records of all laboratory activities,
including training, test results, and equipment maintenance.
o Ensures traceability and accountability.
4. Internal Audits:
o Regular evaluations of laboratory processes to identify areas
for improvement and compliance with regulations.
5. Management Review:
o Periodic reviews by management to assess the effectiveness
of the QA program and implement necessary changes.
6. Compliance with Regulations:
o Adhering to local and international standards, such as ISO
15189 for medical laboratories or CLIA regulations.
Quality Control (QC)
Definition: QC involves the operational techniques and activities used to
monitor and control the quality of laboratory results. It focuses on
identifying defects in the process.
Key Components:
1. Control Samples:
o Use of control materials (known samples) to verify the accuracy
and precision of test results.
o Control limits are established, and results are monitored
against these limits.
2. Calibration:
o Regular calibration of laboratory instruments to ensure they
provide accurate measurements.
o Calibration schedules should be adhered to based on
manufacturer guidelines and regulatory requirements.
3. Proficiency Testing:
o Participation in external proficiency testing programs to
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evaluate laboratory performance against peers.
o Helps identify areas needing improvement.
4. Statistical Process Control:
o Application of statistical methods to monitor and control
processes, helping to identify trends or shifts in data.
o Charts and graphs are often used to visualize performance.
5. Corrective Actions:
o Implementation of procedures for addressing any deviations
from expected results or quality standards.
o Documenting the root cause analysis and actions taken to
prevent recurrence.
Integration of QA and QC
Continuous Improvement: Both QA and QC are part of a continuous
improvement cycle that aims to enhance laboratory performance.
Risk Management: Identifying potential risks in laboratory processes
and implementing strategies to mitigate them.
Patient Safety: Ultimately, QA and QC contribute to better patient
care by ensuring that test results are accurate and reliable.
LESSON (FOUR) 4b: Laboratory practicals
Laboratory practicals are hands-on sessions designed to teach
students and professionals how to perform various experiments and
procedures in a laboratory setting.
They provide valuable experience in applying theoretical knowledge
and developing practical skills.
Laboratory practicals are an essential part of scientific education,
providing the hands-on experience necessary to develop competent and
confident laboratory professionals.
Here’s an overview of what laboratory practicals typically involve:
1. Objectives of Laboratory Practicals
Skill Development: Enhance technical skills related to
instrumentation, sample handling, and analytical techniques.
Application of Theory: Bridge the gap between theoretical knowledge
and real-world applications.
Problem-Solving: Develop critical thinking and troubleshooting skills
through practical experimentation.
Data Analysis: Learn to collect, analyze, and interpret data accurately.
2. Components of a Laboratory Practical
Preparation:
o Pre-Lab Assignments: Review background material, safety
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protocols, and procedures before the lab session.
o Material and Equipment Setup: Ensure all necessary materials,
reagents, and equipment are prepared and functional.
Conducting Experiments:
o Following Protocols: Adhere to standard operating procedures
(SOPs) for accuracy and safety.
o Data Collection: Systematically record observations and
measurements during the experiment.
Safety Practices:
o Personal Protective Equipment (PPE): Use gloves, goggles, and
lab coats as appropriate.
o Emergency Procedures: Be familiar with the location of safety
equipment (e.g., eyewash stations, fire extinguishers) and
protocols for spills or accidents.
3. Types of Laboratory Practicals
Biochemical Analysis: Techniques such as spectrophotometry,
chromatography, and electrophoresis.
Microbiological Techniques: Culturing microorganisms, performing
sensitivity tests, and staining procedures.
Chemical Synthesis: Conducting reactions and purifying products.
Tissue Culture: Growing and manipulating cells in vitro for research
purposes.
4. Data Analysis and Interpretation
Calculations: Performing necessary calculations (e.g., concentration,
dilution factors).
Statistical Analysis: Applying statistical methods to assess data
reliability and significance.
Reporting Results: Writing laboratory reports that summarize
objectives, methods, results, and conclusions.
5. Common Challenges
Technical Difficulties: Equipment malfunction or unexpected results
can arise; problem-solving skills are crucial.
Time Management: Balancing time effectively to complete all tasks
within the allocated session.
Collaboration: Working effectively in teams, communicating findings,
and dividing tasks.
TEXTBOOKS:
(1) CROOK, MARTIN A. “CLINICAL BIOCHEMISTRY AND METABOLIC
MEDICINE” (YEAR OF PUBLICATION 2018) EIGHT EDITION.
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