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inspired By
Biology
F r o m m o l e c u l e s t o m at e r i a l s t o m a c h i n e s
THE NATIONAL ACADEMIES PRESS 500 Fifth Street, N.W. Washington, DC 20001
NOTICE: The project that is the subject of this report was approved by the Governing Board of the National
Research Council, whose members are drawn from the councils of the National Academy of Sciences, the National
Academy of Engineering, and the Institute of Medicine. The members of the committee responsible for the report
were chosen for their special competences and with regard for appropriate balance.
This study is based on work supported by Contract No. DE-FG02-05ER46197 between the National Academy of
Sciences and the Department of Energy and Grant No. DMR-0426181 between the National Academy of Sciences
and the National Science Foundation. Any opinions, findings, conclusions, or recommendations expressed in
this publication are those of the author(s) and do not necessarily reflect the views of the agencies that provided
support for the project.
Inspired by biology : from molecules to materials to machines / Committee on Biomolecular Materials and
Processes, Board on Physics and Astronomy, Board on Life Sciences, Division on Engineering and Physical
Sciences, Division on Earth and Life Studies.
p. cm.
Includes bibliographical references.
ISBN 978-0-309-11704-3 (pbk. book) — ISBN 978-0-309-11705-0 (pdf book) 1. Molecular biology. 2.
Biomolecules—Analysis. 3. Materials—Biotechnology. 4. Biomedical materials. 5. Biomedical engineering. I.
National Research Council (U.S.). Committee on Biomolecular Materials and Processes.
QH506.I4817 2008
570—dc22
2008016751
Copies of this report are available from the National Academies Press, 500 Fifth Street, N.W., Lockbox 285,
Washington, DC 20055; (800) 624-6242 or (202) 334-3313 (in the Washington metropolitan area); Internet,
http://www.nap.edu; and the Board on Physics and Astronomy, National Research Council, 500 Fifth Street, N.W.,
Washington, DC 20001; Internet, http://www.national-academies.org/bpa.
Cover: Three images are shown on the cover of this book, one each to represent a molecule (middle), a material
(bottom), and a machine (top) in biomolecular materials research. (Top) Myosin V (blue-green), a molecular
motor that moves cargo around the cell by walking on actin (red). Courtesy of Paul R. Selvin, University of Illinois
at Urbana-Champaign; created by precisiongraphics.com. (Middle) Antimicrobial peptoids are designed to mimic
the amphipathic structures of antimicrobial peptides; models of the folded structure of a synthetic peptoid are
shown in views both parallel and perpendicular to the helical axis. Residues are color coded: cationic, purple;
hydrophobic, orange; all others, gray. Published in N.P. Chongsiriwatana, J.A. Patch, A.M. Czyzewski, M.T. Dohm,
A. Ivankin, D. Gidalevitz, R.N. Zuckermann, and A.E. Barron, “Peptoids that mimic the structure, function, and
mechanism of helical antimicrobial peptides,” Proceedings of the National Academy of Sciences USA 105(8):2794-
2799 (2008). Copyright 2008 National Academy of Sciences, U.S.A. (Bottom) Array of microlenses on the skeletal
plate of a brittlestar Ophiocoma wendtii that functions as a sophisticated optical element. The whole structure is
composed of an intricately shaped single calcite crystal. The lens size is approximately 50 microns. Courtesy of
J. Aizenberg, Harvard University.
The National Academy of Engineering was established in 1964, under the charter of the National
Academy of Sciences, as a parallel organization of outstanding engineers. It is autonomous in its
administration and in the selection of its members, sharing with the National Academy of Sciences
the responsibility for advising the federal government. The National Academy of Engineering also
sponsors engineering programs aimed at meeting national needs, encourages education and research,
and recognizes the superior achievements of engineers. Dr. Charles M. Vest is president of the National
Academy of Engineering.
The Institute of Medicine was established in 1970 by the National Academy of Sciences to secure
the services of eminent members of appropriate professions in the examination of policy matters
pertaining to the health of the public. The Institute acts under the responsibility given to the National
Academy of Sciences by its congressional charter to be an adviser to the federal government and, upon
its own initiative, to identify issues of medical care, research, and education. Dr. Harvey V. Fineberg
is president of the Institute of Medicine.
The National Research Council was organized by the National Academy of Sciences in 1916 to
associate the broad community of science and technology with the Academy’s purposes of further-
ing knowledge and advising the federal government. Functioning in accordance with general policies
determined by the Academy, the Council has become the principal operating agency of both the
National Academy of Sciences and the National Academy of Engineering in providing services to the
government, the public, and the scientific and engineering communities. The Council is administered
jointly by both Academies and the Institute of Medicine. Dr. Ralph J. Cicerone and Dr. Charles M.
Vest are chair and vice chair, respectively, of the National Research Council.
www.national-academies.org
Staff
DONALD C. SHAPERO, Director, Board on Physics and Astronomy
FRANCES E. SHARPLES, Director, Board on Life Sciences
ADAM P. FAGEN, Senior Program Officer, Board on Life Sciences
NATALIA J. MELCER, Senior Program Officer, Board on Physics and Astronomy
BETH MASIMORE, Christine Mirzayan Science and Technology Policy
Graduate Fellow
CARYN J. KNUTSEN, Senior Program Assistant�����������������������
, Board on Physics and
Astronomy
PHILLIP D. LONG, Senior Program Assistant, Board on Physics and Astronomy
(until August 2006)
VAN AN, Financial Associate, Board on Physics and Astronomy
Staff
DONALD C. SHAPERO, Director, Board on Physics and Astronomy
NATALIA J. MELCER, Senior Program Officer
MERCEDES M. ILAGAN, Administrative Assistant
VAN AN, Financial Associate
vi
Staff
DONALD C. SHAPERO, Director
NATALIA J. MELCER, Senior Program Officer
MICHAEL H. MOLONEY, Senior Program Officer
ROBERT L. RIEMER, Senior Program Officer
DAVID B. LANG, Associate Program Officer
CARYN J. KNUTSEN, Senior Program Assistant
MERCEDES M. ILAGAN, Administrative Assistant
VAN AN, Financial Associate
vii
Staff
FRANCES E. SHARPLES, Director
KERRY A. BRENNER, Senior Program Officer
ADAM P. FAGEN, Senior Program Officer
ANN H. REID, Senior Program Officer
MARILEE K. SHELTON-DAVENPORT, Senior Program Officer
REBECCA L. WALTER, Senior Program Assistant
MERCURY FOX, Program Assistant
ANNA FARRAR, Financial Associate
viii
Preface
The National Research Council of the National Academies convened the Com-
mittee on Biomolecular Materials and Processes (BMAP) to assess current work
and future promise at the intersection of biology and materials science. The Solid
State Sciences Committee of the Board on Physics and Astronomy developed the
charge for this study in consultation with the Board on Life Sciences and the study’s
sponsors at the Department of Energy and the National Science Foundation. The
Committee on BMAP was charged to identify the most compelling questions and
the emerging scientific opportunities at the interface between biology and con-
densed matter and materials research, suggest strategies to best meet the identified
opportunities, and consider connections to national priorities, including health
care, security, the workforce, and economic and societal needs. The committee
did not address tissue engineering in this report, because it has been reviewed
elsewhere and was considered outside the scope of the committee’s charge. The
complete charge is reproduced in Appendix A.
The Committee on BMAP is composed of experts from many different areas of
biomolecular materials research (see Appendix B for biographical sketches of com-
mittee members). The full committee met in person three times (see Appendix C)
to address its charge. The committee formed subgroups to study areas in further
detail and to develop the text of the final report. At its meetings, the committee
heard from experts in the field and from the federal agencies that support BMAP
National Research Council, Capturing the Full Power of Biomaterials for Military Medicine, Wash-
ix
Preface
research. Conference calls and e-mail were used to coordinate the work of the com-
mittee between meetings. This final report reflects the committee’s enthusiasm and
excitement for the research opportunities in BMAP.
The report is the product of input from many people. On behalf of the commit-
tee, I extend my thanks and appreciation to all who participated in this endeavor. I
also thank the speakers who made formal presentations at the committee meetings
(Appendix C); those presentations and the ensuing discussions strongly informed
the committee’s deliberations. In addition, the committee would like to thank
the following people for their insights: Ian Anderson, James R. Baker, Jr., Sergey
Bezrukov, Mark S. Humayun, Nicholas A. Kotov, Ronald G. Larson, John Miao,
Dean A. Myles, Kevin Plaxco, Rudi Podgornik, Clinton Potter, Roger Pynn, Don
Rau, David A. Tirrell, Gregory Voth, Karen Wooley, Wenbing Yun, and Joshua
Zimmerberg. In particular, Theresa Reineke is thanked for her insight and contri-
bution to the challenges in the area of synthesis.
Finally, I also thank the National Research Council staff (Natalia Melcer, Adam
Fagen, Don Shapero, Frances Sharples, Phillip Long, and Caryn Knutsen) for their
guidance and assistance throughout the development of the report.
As chair, I am grateful to the committee members for their wisdom, coopera-
tion, and commitment to ensuring the development of a comprehensive report.
Acknowledgment of Reviewers
This report has been reviewed in draft form by individuals chosen for their
diverse perspectives and technical expertise, in accordance with procedures
approved by the National Research Council’s (NRC’s) Report Review Committee.
The purpose of this independent review is to provide candid and critical comments
that will assist the institution in making its published report as sound as possible
and to ensure that the report meets institutional standards for objectivity, evidence,
and responsiveness to the study charge. The review comments and draft manuscript
remain confidential to protect the integrity of the deliberative process. We wish to
thank the following individuals for their review of this report:
Although the reviewers listed above have provided many constructive com-
ments and suggestions, they were not asked to endorse the conclusions or recom-
mendations, nor did they see the final draft of the report before its release. The
xi
review of this report was overseen by Peter B. Moore, Yale University. Appointed by
the NRC, he was responsible for making certain that an independent examination
of this report was carried out in accordance with institutional procedures and that
all review comments were carefully considered. Responsibility for the final content
of this report rests entirely with the authoring committee and the institution.
Contents
SUMMARY 1
1 INTRODUCTION 5
Unifying Concepts, 5
Areas for Research, 6
Alternative and Renewable Energy, 6
Health and Medicine, 7
National Security, 7
Next-Generation Bioinspired Materials, 8
Enabling Tools, 8
xiii
xiv Contents
Contents xv
Single-Molecule Probes, 90
Single-Molecule Instrumentation, 92
Theory and Computation, 95
Modeling and Computer Simulation, 97
Access to High-Performance Computing Environments, 101
Informatics and Data Mining, 102
Public Domain Codes, 102
The Need for Theoretical Advances, 102
Synthesis of Biomolecular Materials, 104
Synthetic Methods for Materials Synthesis, 105
Materials Synthesis Using Natural Machinery, 107
Materials Synthesis Using a Natural Toolbox, 108
Macromolecular Assembly Routes, 109
Opportunities and Challenges, 113
Suggested Reading, 115
APPENDIXES
Summary
Inspired by Biology
Progress will be facilitated by the efforts of research agencies, the scientific com-
munity, and other stakeholders. In particular, five recommended steps will help to
overcome the scientific challenges associated with these strategies and to translate
the resulting knowledge into achievements of social and economic value.
The synergistic application of approaches traditionally considered to belong
to distinct disciplines will be called for. While such concerted efforts are already
emerging in isolated cases, substantial interagency and interdepartmental coopera-
tion in support of interdisciplinary research and development (R&D) efforts will
be needed.
Summary
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