Heritability in plant breeding - R and SAS code examples

Sample code for ldsc analyses in UKBB

Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)

Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

Code and simulations using interaction-LD score regression

Topological Learning for Brain Networks (Annals of Applied Statistics; MICCAI 2021)

MultiVariate Polygenic Mixture Model

Highly Efficient Imaging Genetics (HEIG)

gwas workflow from raw intensity data to in-silico functional mapping

A library for calculating penetrance tables of any bivariate epistasis model.

BioTools is a repository that has many scripts which can be utilized to solve biological problems.

Pedigree Relatedness Summary Parameters R package

The project focused on the analysis of foxes from 3 different farms and the subsequent presentation of trait heritability results, genetic trends, breeding values and relationship matrix.

Regional Heritability Analysis is a software package for estimating regional heritability of small genomic segments.

A heritability-optimized scoring method using multivariate adaptive regression splines that incorporates 75 variant- and gene-level features. RovHer leverages exome-wide association statistics to train models estimating the probability of RV functional impact.

HESS pipeline

This repository contains the R package ugnome which is a collection of utility functions for statistical genetic analyses.

Developmental version of R package BayesTwin

Non-Additive LD Score Regression