📊 A universal enrichment tool for interpreting omics data

Analyzing and visualizing KEGG information using the grammar of graphics

Make Picrust2 Output Analysis and Visualization Easier

Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)

A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

Build Annotation package by using information from KEGG, NCBI, Ensembl

Function Enrichment analysis and Network construction

A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries

Comprehensive KEGG Data Retrieval Using Multiple Sources

Analysis of RNA-seq data using DESeq2

Companion repository to the article: "Comparative whole-genome approach to identify bacterial traits for microbial interactions"

A biodb extension package for KEGG databases.

Extract pathways from KEGG database using EC entries.

Integration of Ensembl, UniProt, KEGG, and miRBase using R, MySQL, and REST APIs. Demonstrates bioinformatics database design, data retrieval, and relational integration through R–SQL pipelines.

Leo is a web-based toolkit for Laboratory of Animal Proteomics in the department of Animal Science, National Chung Hsing University

Annotate the ruff sandpiper (Calidris pugnax) reference proteome with GO, KEGG, PFAM and other information using various bioinformatics tools and databases.