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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 374 160

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 459 repositories
  • npc_sessions_cache Public

    Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

    AllenInstitute/npc_sessions_cache’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 17, 2026
  • spots-in-space Public

    spatial transcriptomics analysis

    AllenInstitute/spots-in-space’s past year of commit activity
    Python 2 0 14 2 Updated Jan 17, 2026
  • npc_sync Public

    Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.

    AllenInstitute/npc_sync’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 17, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 15 BSD-3-Clause 4 79 5 Updated Jan 16, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Jan 16, 2026
  • Spatial-Transcriptomics-Processing-Pipeline Public
    AllenInstitute/Spatial-Transcriptomics-Processing-Pipeline’s past year of commit activity
    Nextflow 0 0 0 0 Updated Jan 16, 2026
  • mtrain_regimens Public

    Repository to track training stages and regimens for visual behavior

    AllenInstitute/mtrain_regimens’s past year of commit activity
    Python 3 4 14 0 Updated Jan 16, 2026
  • acq4 Public Forked from acq4/acq4

    Data acquisition for patch clamp ephys / optogenetics / imaging experiments

    AllenInstitute/acq4’s past year of commit activity
    Python 1 MIT 53 0 2 Updated Jan 15, 2026
  • neuroanalysis Public

    Modular analysis tools for neurophysiology data

    AllenInstitute/neuroanalysis’s past year of commit activity
    Python 9 MIT 11 1 1 Updated Jan 15, 2026
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 15, 2026
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