Full-Length Alternative Isoform analysis of RNA

New version of long-read fusion isoform detection

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)

Pipeline to identify isoforms from full-length cDNA sequencing data

Pipeline to identify isoforms from full-length cDNA sequencing data

an API for intersections of genomic data

De novo construction of isoforms from long-read data

Notebooks to follow along with "Deep Learning for Biology" Chapters 2 to 6.

AQUAS TF and histone ChIP-seq pipeline

Application for making ENCODE Blacklists

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

Full-length transcriptome splicing and mutation analysis

Technology agnostic long read analysis pipeline for transcriptomes

Transcriptome Assembly, Thinning, and Annotation Tool

Bionic reading experience with Zotero.

A collaborative note taking, wiki and documentation platform that scales. Built with Django and React.

Customizable workflows based on snakemake and python for the analysis of NGS data

Create Standalone Installable Shiny Apps

16S RNA microbiome pipeline

Unsupervised Deep Disentangled Representation of Single-Cell Omics

Visualizing transcript structure and annotation using ggplot2

A Python adaptation of ggtranscript with similar functionality, using Plotly and Polars for fast and interactive RNA isoform visualizations.