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1. pll-score pll-score Public

   Compute Pseudo-Log-Likelihood (PLL) and PPPL for protein sequences using ESM2 models

   Python

2. BCBAUMBC/TM-Align3D BCBAUMBC/TM-Align3D Public

   Compare two protein structures using TM-score and RMSD, and visualize their 3D alignment interactively.

   Jupyter Notebook

3. SSMap SSMap Public

   SSMap is a Python project designed to visualize protein structures in a clear, intuitive way. Using information from Protein Data Bank (PDB) and Dictionary of Secondary Structure for Proteins (DSSP…

   Python