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Stars
Central repository for biomolecular foundation models with shared trainers and pipeline components
HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structures by leveraging the forward pass of a structure prediction m…
Feynman-Kac steering for controllable protein diffusion
All-atom generative protein design using SE(3) flow matching
Design scripts corresponding to "Computational design of sequence-specific DNA-binding proteins."
BindCraft modified to make PyRosetta use and installation optional: no license needed
Scripts for building protein oligomers regulated by NCAA
The package of ProBuilder from Longxing Cao lab
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and…
A Unified Evaluation Suite for Protein Design
Tools (written in C using htslib) for manipulating next-generation sequencing data
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A simplified implementation of DSSP algorithm for PyTorch and NumPy
Protein representation and design under a single training scheme