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a complete reference book for clusterProfiler and its sub-packages

Gene Set Enrichment Analysis and Over Representation Analysis analysis using R

Scripts to calculate weekly nucleotide diversity from GISAID state data

Profile HMMs and annotations for Virtool and NuVs

SC2 variant detection and composition pipeline

ARTIC SARS-CoV-2 workflow and reporting

Example Palmetto tasks

Tesla Light Show

Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS

EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP

BWK awk modified for biological data

This Shiny App is designed to help you estimate sequencing needs and costs on various platforms.

Supplementary material for Cornell CVW on "Python for High Performance"

Tools (written in C using htslib) for manipulating next-generation sequencing data

Automatically exported from code.google.com/p/cdhit

TransDecoder source

Genome-scale protein function classification

Minisupercomputer

Cutadapt removes adapter sequences from sequencing reads

A self-hosted data logger for your Tesla 🚘 [main maintainer=@JakobLichterfeld]

A quality control analysis tool for high throughput sequencing data

Structural variation and indel detection by local assembly

Create regional association plots from GWAS or meta-analysis

A single molecule sequence assembler for genomes large and small.