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@UU-cellbiology

Cell Biology, Neurobiology and Biophysics Department of Utrecht University

code generated in the department

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  1. BigTrace BigTrace Public

    FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets

    Java 29 4

  2. ZstackDepthColorCode ZstackDepthColorCode Public

    Z-stack Depth Colorcode ImageJ FIJI plugin

    Java 25 7

  3. CurveTrace CurveTrace Public

    Curve tracing ImageJ plugin

    Java 20 4

  4. ComDet ComDet Public

    ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)

    Java 19 5

  5. DoM_Utrecht DoM_Utrecht Public

    Detection of Molecules plugin for ImageJ: SMLM 2D/3D localizations, drift and chromatic aberration correction, etc

    Java 15 4

  6. bigvolumebrowser bigvolumebrowser Public

    browsing large volumetric data and shapes

    Java 11

Repositories

Showing 10 of 25 repositories
  • bigvolumebrowser Public

    browsing large volumetric data and shapes

    UU-cellbiology/bigvolumebrowser’s past year of commit activity
    Java 11 BSD-2-Clause 0 0 0 Updated Dec 22, 2025
  • bvv-playground Public

    playing with BigVolumeViewer LUTs/gamma/render

    UU-cellbiology/bvv-playground’s past year of commit activity
    Java 4 BSD-2-Clause 1 0 0 Updated Dec 22, 2025
  • BigTrace Public

    FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets

    UU-cellbiology/BigTrace’s past year of commit activity
    Java 29 BSD-2-Clause 4 1 1 Updated Nov 27, 2025
  • Correlescence Public

    spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)

    UU-cellbiology/Correlescence’s past year of commit activity
    Java 8 GPL-3.0 0 0 0 Updated Nov 6, 2025
  • ZstackDepthColorCode Public

    Z-stack Depth Colorcode ImageJ FIJI plugin

    UU-cellbiology/ZstackDepthColorCode’s past year of commit activity
    Java 25 GPL-3.0 7 0 0 Updated Nov 6, 2025
  • Signed16bit_to_Unsigned16bit Public

    FIJI macro to convert signed 16 bit TIFF files to unsigned 16 bit.

    UU-cellbiology/Signed16bit_to_Unsigned16bit’s past year of commit activity
    ImageJ Macro 0 BSD-2-Clause 0 0 0 Updated Sep 19, 2025
  • averageBasalBodies Public

    a set of ImageJ macros for extraction and averaging of basal bodies from ExM images

    UU-cellbiology/averageBasalBodies’s past year of commit activity
    ImageJ Macro 0 BSD-2-Clause 0 0 0 Updated Sep 1, 2025
  • PTU_Reader Public

    ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files

    UU-cellbiology/PTU_Reader’s past year of commit activity
    Java 9 GPL-3.0 1 0 0 Updated Aug 25, 2025
  • AveragingND Public

    FIJI plugin for the averaging of ND (2/3/4D) images

    UU-cellbiology/AveragingND’s past year of commit activity
    Java 0 BSD-2-Clause 1 1 0 Updated Jul 29, 2025
  • UU_SmartMicroscopy Public

    Python-based modular platform to automate microscopes and design smart microscopy experiments.

    UU-cellbiology/UU_SmartMicroscopy’s past year of commit activity
    Python 1 MIT 2 0 0 Updated Jul 3, 2025
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