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Python implementation of activation maximization with PyTorch.

Python 28 5 Updated Oct 13, 2020

gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

Python 314 51 Updated Jan 13, 2026

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

Python 366 36 Updated Oct 16, 2025
Python 15 2 Updated Oct 21, 2024
Jupyter Notebook 10 Updated Aug 31, 2025

The AI Scientist-v2: Workshop-Level Automated Scientific Discovery via Agentic Tree Search

Python 2,031 380 Updated Dec 19, 2025

On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

Python 24 3 Updated Nov 21, 2025

📊📈 A D3 v7 tutorial - interactive bar chart and multiple coordinated views (MCV)

HTML 259 53 Updated Jan 21, 2026

Algorithms for solving Positive Negative Partial Set K-Cover problem

Jupyter Notebook 3 Updated Feb 17, 2020

ChIP-seq motif analysis

C++ 3 Updated Jul 29, 2019

The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.

Python 8 Updated Feb 12, 2025

A small python library to adjust and annotate axis ticklabels in plots.

Python 52 1 Updated Aug 4, 2025

Official repository for the paper "Improving Graph Neural Network Expressivity via Subgraph Isomorphism Counting" (TPAMI'22) https://arxiv.org/abs/2006.09252

Python 104 24 Updated Jun 15, 2021

Genome Editing Analysis of Long UNidirectional sequencing for GenOme Rearrangements

Python 6 Updated Dec 21, 2024

RNA secondary structure motif discovery

Java 3 3 Updated May 25, 2017

R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem

R 20 Updated Apr 14, 2025

Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.

Python 33,986 7,887 Updated Nov 17, 2025

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

R 324 49 Updated Apr 23, 2024

🎓 Path to a free self-taught education in Computer Science!

HTML 200,637 24,962 Updated Jan 15, 2026

🎓计算机技术与科学自学之旅

1,519 184 Updated Sep 4, 2023

A feature-rich command-line audio/video downloader

Python 143,760 11,638 Updated Jan 19, 2026

deeplearning.ai(吴恩达老师的深度学习课程笔记及资源)

HTML 20,170 6,105 Updated Apr 29, 2022

A random collection of scripts around strand-seq data

R 2 1 Updated Nov 30, 2021

Quickly build Explainable AI dashboards that show the inner workings of so-called "blackbox" machine learning models.

Python 2,469 346 Updated Aug 1, 2025

Source code and main results

C 5 Updated Aug 10, 2021

SCSA: cell type annotation for single-cell RNA-seq data

Python 94 17 Updated Apr 11, 2023

scDataviz: single cell dataviz and downstream analyses

R 66 17 Updated Sep 24, 2021

Embed excel file as an excel-alike table into sphinx documentation

Python 11 5 Updated Mar 23, 2023

Performant Pythonic GenomicRanges

Python 493 50 Updated Jan 8, 2026
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