Pipeline for shotgun metagenomics analyses using Sunbeam wrapper scripts and extensions.

Reproducibility of the paper "Whole-Genome Shotgun Metagenomic Sequencing Reveals Distinct Gut Microbiome Signatures of Obese Cats"

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

Shotgun metagenomics pipeline to process microbiome samples

Studying the oral microbiome of three gorilla subspecies using a shotgun metagenomic approach on dental calculus