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Partial Volume Correction in PET

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

Regression Modeling Strategies

Mixed Models for Repeated Measures (MMRM) in R.

Full head segmentation

This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in "On testing for spatial correspondence between maps of huma…

Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)

all the basic cheatsheets you need to get started to make notes in obsidian.

Machine learning for NeuroImaging in Python

Group ICA/IVA software (MATLAB)

Voxelwise Encoding Model tutorials from the Gallant lab.

A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.

R Package for the mass-univariate voxelwise analysis of NIfTI data

Repository of cmig_tools including FEMA

BrainPainter - Brain Visualisation Software

Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.

REVIGO (REduce + VIsualize Gene Ontology) Core library

A toolbox for comparing brain maps

A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)

A statistics and context decoding toolbox for neuroimaging.

BigBrainWarp

A toolbox for working with Allen Human Brain Atlas microarray expression data

R interface to the ANTs biomedical image processing library

Processing pipelines for the HCP

DTI-ALPS: diffusion tensor imaging along the perivascular space

GOUHFI: novel contrast- and resolution-agnostic segmentation tool for both Ultra-High Field and lower field MRI