scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
remotes::install_github("pwwang/scplotter")
# or
devtools::install_github("pwwang/scplotter")
# or using conda
$ conda install pwwang::r-scplotterClustreePlot | CellVelocityPlot
CCCPlot (Cell-Cell Communication Plot)
ClonalVolumePlot | ClonalAbundancePlot | ClonalResidencyPlot | ClonalDynamicsPlot | ClonalCompositionPlot | ClonalOverlapPlot | ClonalGeneUsagePlot
ClonalRarefactionPlot | ClonalGeneUsagePlot | ClonalDiversityPlot | ClonalPositionalPlot
provider <- tidyprompt::llm_provider_openai(api_key = Sys.getenv("OPENAI_API_KEY"))
chat <- SCPlotterChat$new(provider = provider)
chat$ask("Generate a cell-cell communication plot for the cellphonedb_res data.")
# Tool identified: CCCPlot
# Data object identified: cellphonedb_res
# Running tool: CCCPlotchat$ask("Do a heatmap instead")
# Tool identified: CCCPlot
# Data object identified: cellphonedb_res
# Running tool: CCCPlot