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Pull requests: nf-core/modules

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170 Open 6,927 Closed
170 Open 6,927 Closed
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Pull requests list

traitar module is drafted
#9605 opened Dec 22, 2025 by brovolia Loading…
1
@brovolia
4
Update MLST from 2.23 to 2.25
#9604 opened Dec 22, 2025 by svermai Loading…
1 of 14 tasks
1
Small bug fix for bff
#9600 opened Dec 22, 2025 by LuisHeinzlmeier Loading…
Update vireo
#9599 opened Dec 22, 2025 by LuisHeinzlmeier Loading…
1
Migrate samtools dict/faidx/merge to topics
#9598 opened Dec 21, 2025 by SPPearce Loading…
3
Ngscheckmate topics
#9597 opened Dec 21, 2025 by SPPearce Loading…
7
WIP: new module: MultiQC_SAV
#9587 opened Dec 18, 2025 by matthdsm Loading…
17 tasks
4
Update GitHub PR template check list item - version numbers
#9586 opened Dec 18, 2025 by PeterKnealeCMRI Loading…
Add rgi/bwt
#9585 opened Dec 18, 2025 by vinisalazar Loading…
1
Capture nextclade tag version
#9584 opened Dec 18, 2025 by ammaraziz Loading…
5 tasks done
Fix fastANI module
#9583 opened Dec 17, 2025 by Ethan-Hetrick Loading…
10 of 17 tasks
12
Module to download CDD databases
#9582 opened Dec 17, 2025 by Ales-ibt Loading…
10 tasks done
@Ales-ibt
9
RiboCode - add error handling where the cli tool does not
#9581 opened Dec 17, 2025 by JackCurragh Loading…
9 of 17 tasks
1
Add vcfpgloader/load module
#9579 opened Dec 17, 2025 by Zacharyr41 Loading…
3 tasks done
1
@Zacharyr41
1
rpsblast module and test
#9577 opened Dec 16, 2025 by Ales-ibt Loading…
7 tasks
@Ales-ibt
43
BiG Slice modules for nf-core
#9564 opened Dec 12, 2025 by SkyLexS Loading…
11 of 17 tasks
@SkyLexS
Fix for issue #5021 verifybamid2 module
#9563 opened Dec 12, 2025 by mmYeung Loading…
1
Allow dream to process non-formula contrasts
#9562 opened Dec 11, 2025 by delfiterradas Loading…
17 tasks
1
@delfiterradas
19
fix(bcl_demultiplex): Extract InterOp files from input channel
#9560 opened Dec 11, 2025 by robsyme Loading…
5
Add module t1k/run new module Adding a new module
#9555 opened Dec 11, 2025 by georgiakes Loading…
11 of 16 tasks
6
Update BWA_INDEX memory formula to match BWAMEM2_INDEX pattern
#9528 opened Dec 8, 2025 by Copilot AI • Draft
11 of 17 tasks
1
@edmundmiller
Add draft of FASTQ_REMOVE_ADAPTERS_AND_MERGE subworkflow with tests
#9521 opened Dec 8, 2025 by kornkv Loading…
41
bump vcf2maf to ensembl-vep=113.4 and update containers
#9515 opened Dec 6, 2025 by JustinBellavance Loading…
17 tasks
2
Assemblyscan 1.0.0
#9506 opened Dec 4, 2025 by eit-maxlcummins Loading…
10 tasks done
2
Get conda envs
#9504 opened Dec 4, 2025 by mirpedrol Loading…
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