Documentation update and added a full test #67
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
jmuhlich
requested changes
Dec 2, 2024
Member
jmuhlich
left a comment
There was a problem hiding this comment.
Thanks, I'm sure this feels like a lot of unrewarding busywork but the docs are crucial.
Co-authored-by: Jeremy Muhlich <[email protected]>
Co-authored-by: Jeremy Muhlich <[email protected]>
Co-authored-by: Jeremy Muhlich <[email protected]>
Co-authored-by: Jeremy Muhlich <[email protected]>
Co-authored-by: Jeremy Muhlich <[email protected]>
Co-authored-by: Jeremy Muhlich <[email protected]>
Co-authored-by: Jeremy Muhlich <[email protected]>
Co-authored-by: Jeremy Muhlich <[email protected]>
Member
|
Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.0.2. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
jmuhlich
requested changes
Jan 6, 2025
Co-authored-by: Jeremy Muhlich <[email protected]>
jmuhlich
approved these changes
Jan 9, 2025
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
4 participants
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
I've made another pass or two through the documentation. It still needs work, but I'm starting a pull request so we can discuss.
This also adds a full test that can be run with:
nextflow run . -profile test_full,docker --outdir <OUTDIR>PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).