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NET-Seq data analysis

enhancementNew feature or requestNew feature or request

Status: Open.

#217 In nf-core/nascent;

· MaestSi opened on Oct 20, 2025

PINTS tasks stall when FASTA includes GL/KI contigs; works after restricting to chr

bugSomething isn't workingSomething isn't working

Status: Open.

#215 In nf-core/nascent;

· SR-46 opened on Jul 18, 2025

Generate comprehensive HTML QC reports with interactive plots

Status: Open.

Enhancement

#214 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025

·  

3.0.0

Implement eNRSA algorithmic optimizations for speed and memory

Status: Open.

Enhancement

#213 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025

·  

3.0.0

Add NRSA enhancer prioritization and target gene assignment

Status: Open.

Enhancement

#212 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025

·  

3.0.0

Integrate seqOutBias for enzymatic bias correction

Status: Open.

Enhancement

#211 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025

·  

3.0.0

Comprehensive documentation update for enhanced pipeline features

documentation

Status: Open.

Enhancement

#210 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025

·  

3.0.0

Plan integration roadmap for nascent RNA pipeline enhancements

Status: Open.

#209 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025

·  

3.0.0

Implement RNA degradation ratio calculation

enhancementNew feature or requestNew feature or request

high-priority

Status: Open.

#206 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025

Improve UMI handling and deduplication options

enhancementNew feature or requestNew feature or request

high-priority

Status: Open.

#205 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025

Add serial alignment preprocessing for contamination removal

high-priority

Status: Open.

Enhancement

#204 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025

·  

3.0.0

Add comprehensive nascent RNA QC metrics module

enhancementNew feature or requestNew feature or request

Status: Open.

#203 In nf-core/nascent;

· edmundmiller opened on Jul 13, 2025