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sklearn 1.8 deprecations

Status: Open.

#5941 In nilearn/nilearn;

· Remi-Gau opened on Jan 13, 2026

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0.13.1

Making Nilearn threadsafe

Next Sprint

Performanceissues related to computation time or memory usageissues related to computation time or memory usage

Status: Open.

Enhancement

#5933 In nilearn/nilearn;

· Remi-Gau opened on Jan 8, 2026

[BUG] HTML representation of estimator parameters do not show in notebooks

Bugfor bug reportsfor bug reports

Status: Open.

#5924 In nilearn/nilearn;

· Remi-Gau opened on Jan 5, 2026

·  

0.13.1

🚨 LINKCHECK: failure

Good first issueGood for newcomers. Equivalent to "very low" effort.Good for newcomers. Equivalent to "very low" effort.

Status: Open.

#5921 In nilearn/nilearn;

· github-actions opened on Dec 29, 2025

[ENH] Include atlasreader package in nilearn.reporting.get_clusters_table

Status: Open.

Enhancement

#5918 In nilearn/nilearn;

· JohannesWiesner opened on Dec 22, 2025

[ENH] Harmonize defaults for nilearn.glm.threshold_stats_img and nilearn.glm.second_level.SecondLevelModel.generate_report

Status: Open.

Enhancement

#5917 In nilearn/nilearn;

· JohannesWiesner opened on Dec 22, 2025

[ENH] Don't automatically rename contrasts with nilearn.interfaces.save_glm_to_bids

Documentationfor documentation related questions or requestsfor documentation related questions or requests

Status: Open.

#5916 In nilearn/nilearn;

· JohannesWiesner opened on Dec 22, 2025

·  

0.13.1

[BUG] nilearn.plotting.plot_prob_atlas does not support atlas plotting with one single ROI

PlottingThe issue is related to plotting functionalities.The issue is related to plotting functionalities.

Status: Open.

Bug

#5907 In nilearn/nilearn;

· bthirion opened on Dec 17, 2025

·  

0.13.1

[BUG] Fetal Atlas Talairach : SSL issue

Atlas

DatasetsThis issue is related to datasets or the :mod:`nilearn.datasets` module.This issue is related to datasets or the :mod:`nilearn.datasets` module.

Status: Open.

Bug

#5896 In nilearn/nilearn;

· rousseau opened on Dec 14, 2025

·  

0.13.1

try avoiding using private function from sklearn.

MaintenanceThis issue is related to maintenance work.This issue is related to maintenance work.

Status: Open.

#5872 In nilearn/nilearn;

· Remi-Gau opened on Nov 28, 2025

·  

0.13.1

improve reporting

Next Sprint

Report

Status: Open.

#5828 In nilearn/nilearn;

· Remi-Gau opened on Nov 6, 2025

·  

0.13.1

Add more example sections for each function in the user API

Documentationfor documentation related questions or requestsfor documentation related questions or requests

Masker

Status: Open.

#5824 In nilearn/nilearn;

· Remi-Gau opened on Nov 6, 2025

·  

0.13.1