Stars
Files and code for my blog, Scientific Discovery
Run Windows apps such as Microsoft Office/Adobe in Linux (Ubuntu/Fedora) and GNOME/KDE as if they were a part of the native OS, including Nautilus integration. Hard fork of https://github.com/Fmst…
Tools for plotting methylation data in various ways
Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.
Extract methylation calls from long reads (ONT/ PacBio)
CLI tool to generate terraform files from existing infrastructure (reverse Terraform). Infrastructure to Code
Conda recipes for the bioconda channel.
A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.
🪐 🤖 AI Agents for JupyterLab with 🔧 MCP tools - Chat interface for optimized notebook interaction and code execution.
Rmd source files for the HarvardX series PH525x
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
High-quality circular representations of taxonomic and phylogenetic trees
Nanopore demultiplexing, QC and alignment pipeline
Lectures and exercises for the 2024 Pangenome Summer in Piacenza
Hacky Python scripts for downloading your Twitter likes & converting to HTML. Note: I used this once and have no intention of updating it or spending any more seconds thinking about Twitter. Good l…
Best practices and workflow for genome annotation
Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!
Learn how to design, develop, deploy and iterate on production-grade ML applications.
A curated list of awesome Machine Learning frameworks, libraries and software.
🏅 Collection of Kaggle Solutions and Ideas 🏅
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials,…