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Pull requests: biopython/biopython

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Pull requests list

Remove code that was deprecated in 1.85
#5144 opened Jan 21, 2026 by mdehoon Loading…
3 tasks done
1
Migrate to pyproject.toml
#5142 opened Jan 16, 2026 by xelandernt Loading…
3 tasks done
1
15
bwl1289/fix/5137/undefined-symbols
#5141 opened Jan 13, 2026 by BwL1289 Loading…
3 tasks done
1
1
Fix Numpy 2.4 compatibility in PDB/vectors.py
#5138 opened Jan 9, 2026 by Augustin-Zidek Loading…
3 tasks done
1
13
Added PERMISSIVE argument to MMCIFParser as in PDBParser.
#5134 opened Jan 6, 2026 by piecole Loading…
3 tasks done
4
Run PSEA in a temporary directory
#5133 opened Jan 6, 2026 by kirandharmar867-maker • Draft
1
12
Added depreciation error to MMTFParser.get_structure_from_url since RCSB no longer serves MMTF
#5129 opened Jan 2, 2026 by piecole Loading…
3 tasks done
@JoaoRodrigues
make sure that polar_angle is initialized even if the radius is zero,…
#5127 opened Dec 26, 2025 by mdehoon Loading…
3 tasks done
2
Add editable install warning
#5124 opened Dec 23, 2025 by ACA103 Loading…
6
Improve performance of MMCIFParser
#5121 opened Dec 17, 2025 by ozan Loading…
3 tasks done
3
Avoid http links in Bio.Entrez
#5114 opened Nov 28, 2025 by mdehoon • Draft
3 tasks done
1
chore: add type annotation to Bio/File.py
#5088 opened Oct 24, 2025 by szabgab Loading…
3 tasks done
5
Add type annotations
#5087 opened Oct 24, 2025 by szabgab Loading…
12
Complete C acceleration for melting temperature calculations
#5085 opened Oct 15, 2025 by rhowardstone Loading…
8 tasks done
15
Add __next__ method to FastaTwoLineIterator
#5078 opened Oct 13, 2025 by vihaankulkarni29 Loading…
3
Add support for terminal_columns in Alignment formatting, issue 5035
#5070 opened Sep 19, 2025 by data2code Loading…
1 task
1
30
Added subpopulation function and validation logic
#5042 opened Aug 16, 2025 by timlee-bioinf Loading…
3 tasks
@tiagoantao
1
Add SeqIO read/write support for NCBI 5-column tab-delimited feature tables
#5032 opened Jul 21, 2025 by michaelfm1211 • Draft
3 tasks done
1
3
Replaced print with warn/stderrs in NCBIXML.py
#5030 opened Jul 17, 2025 by head-ease08 Loading…
3 tasks done
1
17
Add option to ignore N-/C-terminus effects in isoelectric point calculation
#5022 opened Jun 27, 2025 by FriedLabJHU Loading…
1 task
2
Accelerated motif search algorithms on dna sequences
#5016 opened Jun 19, 2025 by quim6 Loading…
3 tasks done
8
Remove deprecated Bio.HMM
#5009 opened Jun 17, 2025 by peterjc Loading…
3 tasks done
7
Code-visualization for the biopython codebase
#5008 opened Jun 16, 2025 by ivanmilevtues Loading…
3 tasks done
5
types - add a script that tracks the progress of typed API surface
#5003 opened Jun 3, 2025 by refack Loading…
2 of 3 tasks
Use default gap='-' in translate function to match Seq method
#4994 opened May 8, 2025 by peterjc Loading…
3 tasks done
2
ProTip! Updated in the last three days: updated:>2026-01-17.