Tiberius is a deep learning gene finder.

edgePython is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data. It also includes a new single-cell differential expression method that exte…

quality filtering tool for long reads

Fast alignment tool based on bwa-mem

Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye

Fast DNA search and [host] depletion using minimizers

an API for intersections of genomic data

A fully open source biomolecular structure prediction model based on AlphaFold3

RAGNAROK is a nextflow-implemented pipeline for rapid genome annotation using multiple lines of evidence.

Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads

Easy single cell analysis platform for enrichment

Get up and running with Kimi-K2.5, GLM-5, MiniMax, DeepSeek, gpt-oss, Qwen, Gemma and other models.

Setup and run AlphaFold as a Singularity container

Evaluation and polishing workflows for T2T genome assemblies

In silico directed evolution of peptide binders with AlphaFold

HPC Monitoring Tool

Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

This is the standalone version of the EviAnn pipeline

All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout

An efficient CLI to extract sequences from the SRA

REPrise is de novo interspersed repeat detection software.

Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data

GCUA - General Codon Usage Analysis (v2)

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

IQ-TREE version 3: software for phylogenetics

A high-performance BigWig and BigBed library in Rust

A tool for somatic structural variant calling using long reads