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@genpat-it

GENPAT (Italian National Reference Centre for WGS of microbial pathogens)

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  1. spread spread Public

    Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of both tree layout and metadata.

    CSS 10

  2. dist2mst dist2mst Public

    High-performance tool for constructing Minimum Spanning Trees from symmetric distance matrices. Features Numba-accelerated algorithms, parallel processing, and zero-distance grouping. Outputs MST i…

    Python 2

  3. cgDist cgDist Public

    Ultra-fast SNP/indel-level distance calculator for core genome MLST analysis in bacterial genomics

    Rust 2

  4. cgmlst-dists-py cgmlst-dists-py Public

    The python multithreaded version of the famous cgmlst-dists bioinformatic tool by Torsten Seemann

    Python 1

  5. cohesive cohesive Public

    Docker-based COHESIVE Information System (CIS) for One Health surveillance, outbreak investigation, and risk assessment of zoonoses.

    Groovy 1

  6. wiki-engine wiki-engine Public

    A Docker-based documentation system combining MkDocs and Word document generation.

    Python 1

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