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gsearch Public
Forked from jean-pierreBoth/gsearchApproximate nearest neighbour search for microbial genomes based on hash metric
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kmerutils Public
Forked from jean-pierreBoth/kmerutilsKmer generating, counting hashing and related
Rust UpdatedDec 27, 2025 -
lash Public
Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog
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simple_hll Public
Forked from sundy-li/simple_hllA simple HyperLogLog implementation in rust
Rust Apache License 2.0 UpdatedDec 26, 2025 -
SuperBit Public
Super-Bit locality-sensitive hashing
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DartUniFrac Public
Approximate UniFrac via Weighted MinHash 🦀
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qp-pacbio Public
Forked from qiita-spots/qp-pacbioPython BSD 3-Clause "New" or "Revised" License UpdatedDec 22, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedDec 21, 2025 -
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succparen Public
Forked from sile/succparenSuccinct Data Structures written in Rust
Rust MIT License UpdatedDec 19, 2025 -
sparse_features Public
Simulate sparse features for microbiome data analysis
Rust UpdatedDec 18, 2025 -
dartminhash-rs Public
Fast Sketching for Weighted Sets
minhash sketching locality-sensitive-hashing hash-algorithm jaccard-similarity jaccard similarity-metricRust MIT License UpdatedDec 17, 2025 -
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BigSig Public
BItsliced Genomic Signature Index (BIGSI) for fast sequence search based on kmers or minimizers
Rust MIT License UpdatedDec 14, 2025 -
blog Public
Forked from barryclark/jekyll-nowBuild a Jekyll blog in minutes, without touching the command line.
SCSS MIT License UpdatedDec 11, 2025 -
graphembed Public
Forked from jean-pierreBoth/graphembedgraph embedding, density friendly decomposition
Jupyter Notebook MIT License UpdatedDec 11, 2025 -
graphbin-visualise-wasm-app Public
Forked from metagentools/graphbin-visualise-wasm-appGraphBin Visualise WebAssembly App
JavaScript GNU General Public License v3.0 UpdatedDec 5, 2025 -
fast_radix_trie Public
Forked from bluecatengineering/fast_radix_trieA fast, memory-efficient radix tree implementation written in Rust
Rust MIT License UpdatedNov 28, 2025 -
unifrac-binaries Public
Forked from biocore/unifrac-binariesC++ BSD 3-Clause "New" or "Revised" License UpdatedNov 24, 2025 -
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ClairS Public
Forked from HKU-BAL/ClairSClairS - a deep-learning method for long-read somatic small variant calling
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 18, 2025 -
scalable_cuckoo_filter Public
Forked from sile/scalable_cuckoo_filterA variant of Cuckoo Filter whose size automatically scales as necessary
Rust MIT License UpdatedNov 13, 2025 -
rust-mdbg Public
Forked from ekimb/rust-mdbgminimizer-space de Bruijn graphs (mdBG) for whole genome assembly
Rust MIT License UpdatedNov 11, 2025 -
coral Public
Forked from devdeliw/coralA pure-rust BLAS implementation for aarch64.
Rust MIT License UpdatedNov 2, 2025 -
probability-rs Public
Forked from brbtavares/probability-rsProbability distributions for Rust with a simple API, performance, and deterministic sampling.
Rust MIT License UpdatedNov 2, 2025 -
ggcat Public
Forked from algbio/ggcatCompacted and colored de Bruijn graph construction and querying
Rust MIT License UpdatedOct 20, 2025 -
hannoy Public
Forked from nnethercott/hannoyProduction-ready KV-backed HNSW implementation in Rust using LMDB
Rust MIT License UpdatedOct 19, 2025
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