Refresh linkml-model documentation pages with latest and greatest fea…

…tures (#226)

* upgrade linkml and other dependencies

* config changes to accommodate latest doc features

* remove redundant  in make gen-doc cmd

* Fix pydantic version mismatch in poetry.lock

Update pydantic from 1.10.7 to 2.12.5 to be compatible with linkml 1.9.6
which requires GetPydanticSchema from pydantic v2.9+.

Co-Authored-By: Claude Opus 4.5 <[email protected]>

* Update uv.lock

---------

Co-authored-by: Claude Opus 4.5 <[email protected]>
Co-authored-by: Nico Matentzoglu <[email protected]>

Merge pull request #230 from linkml/fix-python-version-release-yaml

Quote Python version in release workflow

Merge pull request #228 from linkml/license

add LICENSE, CITATION.cff, .zenodo.json

Merge pull request #228 from linkml/license

add LICENSE, CITATION.cff, .zenodo.json

Merge pull request #211 from linkml/add-alias-slot-to-class-definition

Add the alias slot to the class_definition class

Merge pull request #198 from vincentkelleher/update_ifabsent_metamodel

Update ifabsent metamodel

Merge pull request #198 from vincentkelleher/update_ifabsent_metamodel

Update ifabsent metamodel

Merge pull request #183 from linkml/release-candidate-1.7.0rc3

1.7.0rc3

Merge pull request #178 from linkml/additional-mappings-to-sio

Adding mappings to SIO

Merge pull request #168 from pkalita-lbl/versioned-docs

Use versioned documentation deployment