Efficient medoid-based clustering algorithms for large and fuzzy data

One-step to Cluster and Visualize Gene Expression Matrix

R package for distilling functional annotations of bacterial genomes and metagenomes

SamPling Reads algorIthm to eStimate frequent k-merS

Differential k-mer analysis

KmerGO2 is almost 2x faster than KmerGO which is a user-friendly tool to identify the group-specific sequences on two groups of high throughput sequencing datasets.

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Locality Sensitive Hashing In R

reuters

R package for basic microbial sequence handling

Tools for Working with Biological Sequence Databases in R

rSWeeP is an alignment-free method for the vector representation of the biological sequences (amino acid and nucleotide).

N-Gram Analysis of Biological Sequences

kaamer - protein identification based on amino acid kmers

Approximate nearest neighbour search for microbial genomes based on hash metric

R tool for parsing .xml metadata obtained through NCBI BioSample into tabular format

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Annotation of microbial (meta)genomes