tools for UMAP and linear probe inspection

Training and inference machine learning code for the paper, "Use of a convolutional neural network for direct detection of acid-fast bacilli from clinical specimens"

Introduction to Artificial Intelligence - laboratories at the Warsaw University of Technology

🔬 Simple containerised whole slide image rendering in the browser

[TMI'2025] TAD-Graph: Enhancing Whole Slide Image Analysis via Task-Aware Subgraph Disentanglement

The source code of "ccRCC metastasis prediction via exploring high-order correlations on multiple WSIs"

PyPathomics is an open-source software for gigapixel whole-slide image analysis. Extract features directly from HoverNet's json file.

Whole Slide Images Anonymization Library

Automatic segmentation tool extracted from the BD-PATH website.

Repo to store the front-end code for the Participant Whole Slide Image Viewer

Service layer for the participant whole slide image viewer

Code for "Improving Stain Invariance of CNNs for Segmentation by Fusing Channel Attention and Domain-Adversarial Training"

Principle component analysis with Biomax samples

Interpretable Analysis of Histological WSIs

Beyin Omurilik Sıvıcında Meme Karsinom Metastazı / Breast Carcinoma Metastasis in Cerebrospinal Fluid

Morpho-semantic Components (MSC) for Word Sense Induction and Disambiguation (WSI\WSD)

Automated segmentation of H&E and Immunohistochemistry stained synovial tissue in histopathology Whole Slide Images - MIUA 2023

PathoMozhi is a Flamingo-style vision-language model for computational pathology. It combines patch-level visual features from histology slides with biomedical language modeling to enable diagnostic report generation and multimodal representation learning. Checkpoint available on Hugging Face: oyemainhun/pathoMozhi

PyQt WSI(Whole Slide Images) viewer